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CALML6 (calmodulin like 6)

Identity

Alias_namescalmodulin-like 6
Alias_symbol (synonym)CAGLP
Other alias
HGNC (Hugo) CALML6
LocusID (NCBI) 163688
Atlas_Id 61392
Location 1p36.33  [Link to chromosome band 1p36]
Location_base_pair Starts at 1914827 and ends at 1917294 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CALML6   24193
Cards
Entrez_Gene (NCBI)CALML6  163688  calmodulin like 6
AliasesCAGLP
GeneCards (Weizmann)CALML6
Ensembl hg19 (Hinxton)ENSG00000169885 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169885 [Gene_View]  chr1:1914827-1917294 [Contig_View]  CALML6 [Vega]
ICGC DataPortalENSG00000169885
TCGA cBioPortalCALML6
AceView (NCBI)CALML6
Genatlas (Paris)CALML6
WikiGenes163688
SOURCE (Princeton)CALML6
Genetics Home Reference (NIH)CALML6
Genomic and cartography
GoldenPath hg38 (UCSC)CALML6  -     chr1:1914827-1917294 +  1p36.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CALML6  -     1p36.33   [Description]    (hg19-Feb_2009)
EnsemblCALML6 - 1p36.33 [CytoView hg19]  CALML6 - 1p36.33 [CytoView hg38]
Mapping of homologs : NCBICALML6 [Mapview hg19]  CALML6 [Mapview hg38]
OMIM610171   
Gene and transcription
Genbank (Entrez)AF490905 AY566229 BC053567 BC160060
RefSeq transcript (Entrez)NM_001330313 NM_138705
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CALML6
Cluster EST : UnigeneHs.85902 [ NCBI ]
CGAP (NCI)Hs.85902
Alternative Splicing GalleryENSG00000169885
Gene ExpressionCALML6 [ NCBI-GEO ]   CALML6 [ EBI - ARRAY_EXPRESS ]   CALML6 [ SEEK ]   CALML6 [ MEM ]
Gene Expression Viewer (FireBrowse)CALML6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)163688
GTEX Portal (Tissue expression)CALML6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TD86   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TD86  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TD86
Splice isoforms : SwissVarQ8TD86
PhosPhoSitePlusQ8TD86
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom   
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)    EF-hand_8 (PF13833)   
Domain families : Pfam (NCBI)pfam13499    pfam13833   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)CALML6
DMDM Disease mutations163688
Blocks (Seattle)CALML6
SuperfamilyQ8TD86
Human Protein AtlasENSG00000169885
Peptide AtlasQ8TD86
HPRD12997
IPIIPI00152482   IPI00794661   
Protein Interaction databases
DIP (DOE-UCLA)Q8TD86
IntAct (EBI)Q8TD86
FunCoupENSG00000169885
BioGRIDCALML6
STRING (EMBL)CALML6
ZODIACCALML6
Ontologies - Pathways
QuickGOQ8TD86
Ontology : AmiGOcalcium ion binding  nucleus  cytoplasm  
Ontology : EGO-EBIcalcium ion binding  nucleus  cytoplasm  
Pathways : KEGGRas signaling pathway    Rap1 signaling pathway    Calcium signaling pathway    Phosphatidylinositol signaling system    Oocyte meiosis    Adrenergic signaling in cardiomyocytes    Vascular smooth muscle contraction    Circadian entrainment    Long-term potentiation    Neurotrophin signaling pathway    Dopaminergic synapse    Olfactory transduction    Phototransduction    Insulin signaling pathway    GnRH signaling pathway    Estrogen signaling pathway    Melanogenesis    Salivary secretion    Gastric acid secretion    Alzheimer's disease    Amphetamine addiction    Alcoholism    Pertussis    Tuberculosis    Glioma   
NDEx NetworkCALML6
Atlas of Cancer Signalling NetworkCALML6
Wikipedia pathwaysCALML6
Orthology - Evolution
OrthoDB163688
GeneTree (enSembl)ENSG00000169885
Phylogenetic Trees/Animal Genes : TreeFamCALML6
HOVERGENQ8TD86
HOGENOMQ8TD86
Homologs : HomoloGeneCALML6
Homology/Alignments : Family Browser (UCSC)CALML6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCALML6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CALML6
dbVarCALML6
ClinVarCALML6
1000_GenomesCALML6 
Exome Variant ServerCALML6
ExAC (Exome Aggregation Consortium)CALML6 (select the gene name)
Genetic variants : HAPMAP163688
Genomic Variants (DGV)CALML6 [DGVbeta]
DECIPHERCALML6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCALML6 
Mutations
ICGC Data PortalCALML6 
TCGA Data PortalCALML6 
Broad Tumor PortalCALML6
OASIS PortalCALML6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCALML6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCALML6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CALML6
DgiDB (Drug Gene Interaction Database)CALML6
DoCM (Curated mutations)CALML6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CALML6 (select a term)
intoGenCALML6
Cancer3DCALML6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610171   
Orphanet
MedgenCALML6
Genetic Testing Registry CALML6
NextProtQ8TD86 [Medical]
TSGene163688
GENETestsCALML6
Target ValidationCALML6
Huge Navigator CALML6 [HugePedia]
snp3D : Map Gene to Disease163688
BioCentury BCIQCALML6
ClinGenCALML6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD163688
Chemical/Pharm GKB GenePA134968051
Clinical trialCALML6
Miscellaneous
canSAR (ICR)CALML6 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCALML6
EVEXCALML6
GoPubMedCALML6
iHOPCALML6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:41:59 CEST 2017

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