Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CALN1 (calneuron 1)

Identity

Other aliasCABP8
HGNC (Hugo) CALN1
LocusID (NCBI) 83698
Atlas_Id 61393
Location 7q11.22  [Link to chromosome band 7q11]
Location_base_pair Starts at 71244476 and ends at 71802208 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ARHGAP21 (10p12.1) / CALN1 (7q11.22)CALN1 (7q11.22) / IFNAR1 (21q22.11)KMT2C (7q36.1) / CALN1 (7q11.22)
NTNG1 (1p13.3) / CALN1 (7q11.22)MLL3 CALN1NTNG1 CALN1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CALN1   13248
Cards
Entrez_Gene (NCBI)CALN1  83698  calneuron 1
AliasesCABP8
GeneCards (Weizmann)CALN1
Ensembl hg19 (Hinxton)ENSG00000183166 [Gene_View]  chr7:71244476-71802208 [Contig_View]  CALN1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000183166 [Gene_View]  chr7:71244476-71802208 [Contig_View]  CALN1 [Vega]
ICGC DataPortalENSG00000183166
TCGA cBioPortalCALN1
AceView (NCBI)CALN1
Genatlas (Paris)CALN1
WikiGenes83698
SOURCE (Princeton)CALN1
Genetics Home Reference (NIH)CALN1
Genomic and cartography
GoldenPath hg19 (UCSC)CALN1  -     chr7:71244476-71802208 -  7q11.22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CALN1  -     7q11.22   [Description]    (hg38-Dec_2013)
EnsemblCALN1 - 7q11.22 [CytoView hg19]  CALN1 - 7q11.22 [CytoView hg38]
Mapping of homologs : NCBICALN1 [Mapview hg19]  CALN1 [Mapview hg38]
OMIM607176   
Gene and transcription
Genbank (Entrez)AF282250 AK091485 AK094469 AK123862 AK313054
RefSeq transcript (Entrez)NM_001017440 NM_031468
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)CALN1
Cluster EST : UnigeneHs.592750 [ NCBI ]
CGAP (NCI)Hs.592750
Alternative Splicing GalleryENSG00000183166
Gene ExpressionCALN1 [ NCBI-GEO ]   CALN1 [ EBI - ARRAY_EXPRESS ]   CALN1 [ SEEK ]   CALN1 [ MEM ]
Gene Expression Viewer (FireBrowse)CALN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83698
GTEX Portal (Tissue expression)CALN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXU9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXU9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXU9
Splice isoforms : SwissVarQ9BXU9
PhosPhoSitePlusQ9BXU9
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom    S100/CaBP-9k_CS   
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)   
Domain families : Pfam (NCBI)pfam13499   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)CALN1
DMDM Disease mutations83698
Blocks (Seattle)CALN1
SuperfamilyQ9BXU9
Human Protein AtlasENSG00000183166
Peptide AtlasQ9BXU9
HPRD06209
IPIIPI00027814   IPI00878020   IPI00869154   IPI00926061   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXU9
IntAct (EBI)Q9BXU9
FunCoupENSG00000183166
BioGRIDCALN1
STRING (EMBL)CALN1
ZODIACCALN1
Ontologies - Pathways
QuickGOQ9BXU9
Ontology : AmiGOcalcium ion binding  plasma membrane  integral component of membrane  trans-Golgi network membrane  perinuclear region of cytoplasm  
Ontology : EGO-EBIcalcium ion binding  plasma membrane  integral component of membrane  trans-Golgi network membrane  perinuclear region of cytoplasm  
NDEx NetworkCALN1
Atlas of Cancer Signalling NetworkCALN1
Wikipedia pathwaysCALN1
Orthology - Evolution
OrthoDB83698
GeneTree (enSembl)ENSG00000183166
Phylogenetic Trees/Animal Genes : TreeFamCALN1
HOVERGENQ9BXU9
HOGENOMQ9BXU9
Homologs : HomoloGeneCALN1
Homology/Alignments : Family Browser (UCSC)CALN1
Gene fusions - Rearrangements
Fusion: TCGAMLL3 CALN1
Fusion: TCGANTNG1 CALN1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCALN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CALN1
dbVarCALN1
ClinVarCALN1
1000_GenomesCALN1 
Exome Variant ServerCALN1
ExAC (Exome Aggregation Consortium)CALN1 (select the gene name)
Genetic variants : HAPMAP83698
Genomic Variants (DGV)CALN1 [DGVbeta]
DECIPHER (Syndromes)7:71244476-71802208  ENSG00000183166
CONAN: Copy Number AnalysisCALN1 
Mutations
ICGC Data PortalCALN1 
TCGA Data PortalCALN1 
Broad Tumor PortalCALN1
OASIS PortalCALN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCALN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCALN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CALN1
DgiDB (Drug Gene Interaction Database)CALN1
DoCM (Curated mutations)CALN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CALN1 (select a term)
intoGenCALN1
Cancer3DCALN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607176   
Orphanet
MedgenCALN1
Genetic Testing Registry CALN1
NextProtQ9BXU9 [Medical]
TSGene83698
GENETestsCALN1
Huge Navigator CALN1 [HugePedia]
snp3D : Map Gene to Disease83698
BioCentury BCIQCALN1
ClinGenCALN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83698
Chemical/Pharm GKB GenePA26045
Clinical trialCALN1
Miscellaneous
canSAR (ICR)CALN1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCALN1
EVEXCALN1
GoPubMedCALN1
iHOPCALN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:58:01 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.