Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CALR3 (calreticulin 3)

Identity

Other namesCMH19
CRT2
CT93
HGNC (Hugo) CALR3
LocusID (NCBI) 125972
Location 19p13.11
Location_base_pair Starts at 16589868 and ends at 16607003 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CALR3   20407
Cards
Entrez_Gene (NCBI)CALR3  125972  calreticulin 3
GeneCards (Weizmann)CALR3
Ensembl (Hinxton)ENSG00000269058 [Gene_View]  chr19:16589868-16607003 [Contig_View]  CALR3 [Vega]
AceView (NCBI)CALR3
Genatlas (Paris)CALR3
WikiGenes125972
SOURCE (Princeton)NM_145046
Genomic and cartography
GoldenPath (UCSC)CALR3  -  19p13.11   chr19:16589868-16607003 -  19p13.11   [Description]    (hg19-Feb_2009)
EnsemblCALR3 - 19p13.11 [CytoView]
Mapping of homologs : NCBICALR3 [Mapview]
OMIM611414   613875   
Gene and transcription
Genbank (Entrez)AA724299 AA910019 AB576176 AK058084 BC014595
RefSeq transcript (Entrez)NM_145046
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NG_031959 NT_011295 NW_001838484 NW_004929414
Consensus coding sequences : CCDS (NCBI)CALR3
Cluster EST : UnigeneHs.304020 [ NCBI ]
CGAP (NCI)Hs.304020
Alternative Splicing : Fast-db (Paris)GSHG0033919
Alternative Splicing GalleryENSG00000269058
Gene ExpressionCALR3 [ NCBI-GEO ]     CALR3 [ SEEK ]   CALR3 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96L12 (Uniprot)
NextProtQ96L12  [Medical]
With graphics : InterProQ96L12
Splice isoforms : SwissVarQ96L12 (Swissvar)
Domaine pattern : Prosite (Expaxy)CALRETICULIN_1 (PS00803)    CALRETICULIN_2 (PS00804)    ER_TARGET (PS00014)   
Domains : Interpro (EBI)Calret/calnex    Calret/calnex_CS    Calreticulin    Calreticulin/calnexin_P_dom    ConA-like_lec_gl_sf    ConA-like_subgrp   
Related proteins : CluSTrQ96L12
Domain families : Pfam (Sanger)Calreticulin (PF00262)   
Domain families : Pfam (NCBI)pfam00262   
DMDM Disease mutations125972
Blocks (Seattle)Q96L12
Human Protein AtlasENSG00000269058
Peptide AtlasQ96L12
HPRD12999
IPIIPI00153053   
Protein Interaction databases
DIP (DOE-UCLA)Q96L12
IntAct (EBI)Q96L12
FunCoupENSG00000269058
BioGRIDCALR3
InParanoidQ96L12
Interologous Interaction database Q96L12
IntegromeDBCALR3
STRING (EMBL)CALR3
Ontologies - Pathways
Ontology : AmiGOcalcium ion binding  endoplasmic reticulum lumen  protein folding  spermatogenesis  cell differentiation  unfolded protein binding  
Ontology : EGO-EBIcalcium ion binding  endoplasmic reticulum lumen  protein folding  spermatogenesis  cell differentiation  unfolded protein binding  
REACTOMECALR3
Protein Interaction DatabaseCALR3
Wikipedia pathwaysCALR3
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CALR3
SNP (GeneSNP Utah)CALR3
SNP : HGBaseCALR3
Genetic variants : HAPMAPCALR3
1000_GenomesCALR3 
ICGC programENSG00000269058 
Somatic Mutations in Cancer : COSMICCALR3 
CONAN: Copy Number AnalysisCALR3 
Mutations and Diseases : HGMDCALR3
OMIM611414    613875   
GENETestsCALR3
Disease Genetic AssociationCALR3
Huge Navigator CALR3 [HugePedia]  CALR3 [HugeCancerGEM]
Genomic VariantsCALR3  CALR3 [DGVbeta]
Exome VariantCALR3
dbVarCALR3
ClinVarCALR3
snp3D : Map Gene to Disease125972
General knowledge
Homologs : HomoloGeneCALR3
Homology/Alignments : Family Browser (UCSC)CALR3
Phylogenetic Trees/Animal Genes : TreeFamCALR3
Chemical/Protein Interactions : CTD125972
Chemical/Pharm GKB GenePA134922944
Clinical trialCALR3
Cancer Resource (Charite)ENSG00000269058
Other databases
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
CoreMineCALR3
iHOPCALR3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 17:03:36 CEST 2014

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