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CALR3 (calreticulin 3)

Identity

Alias (NCBI)CMH19
CRT2
CT93
HGNC (Hugo) CALR3
HGNC Alias symbCRT2
FLJ25355
MGC26577
CT93
HGNC Alias namecancer/testis antigen 93
 calsperin
LocusID (NCBI) 125972
Atlas_Id 50077
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 16479061 and ends at 16496167 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
EPS15L1 (19p13.11)::CALR3 (19p13.11)EPS15L1 19p13.11::CALR3 19p13.11

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CALR3   20407
LRG (Locus Reference Genomic)LRG_422
Cards
Entrez_Gene (NCBI)CALR3    calreticulin 3
AliasesCMH19; CRT2; CT93
GeneCards (Weizmann)CALR3
Ensembl hg19 (Hinxton)ENSG00000269058 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000269058 [Gene_View]  ENSG00000269058 [Sequence]  chr19:16479061-16496167 [Contig_View]  CALR3 [Vega]
ICGC DataPortalENSG00000269058
TCGA cBioPortalCALR3
AceView (NCBI)CALR3
Genatlas (Paris)CALR3
SOURCE (Princeton)CALR3
Genetics Home Reference (NIH)CALR3
Genomic and cartography
GoldenPath hg38 (UCSC)CALR3  -     chr19:16479061-16496167 -  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CALR3  -     19p13.11   [Description]    (hg19-Feb_2009)
GoldenPathCALR3 - 19p13.11 [CytoView hg19]  CALR3 - 19p13.11 [CytoView hg38]
ImmunoBaseENSG00000269058
Genome Data Viewer NCBICALR3 [Mapview hg19]  
OMIM611414   
Gene and transcription
Genbank (Entrez)AA724299 AA910019 AB576176 AK058084 BC014595
RefSeq transcript (Entrez)NM_145046
Consensus coding sequences : CCDS (NCBI)CALR3
Gene ExpressionCALR3 [ NCBI-GEO ]   CALR3 [ EBI - ARRAY_EXPRESS ]   CALR3 [ SEEK ]   CALR3 [ MEM ]
Gene Expression Viewer (FireBrowse)CALR3 [ Firebrowse - Broad ]
GenevisibleExpression of CALR3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)125972
GTEX Portal (Tissue expression)CALR3
Human Protein AtlasENSG00000269058-CALR3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96L12   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96L12  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96L12
PhosPhoSitePlusQ96L12
Domaine pattern : Prosite (Expaxy)CALRETICULIN_1 (PS00803)    CALRETICULIN_2 (PS00804)    ER_TARGET (PS00014)   
Domains : Interpro (EBI)Calret/calnex    Calret/calnex_CS    Calreticulin    Calreticulin/calnexin_P_dom_sf    ConA-like_dom_sf   
Domain families : Pfam (Sanger)Calreticulin (PF00262)   
Domain families : Pfam (NCBI)pfam00262   
Conserved Domain (NCBI)CALR3
SuperfamilyQ96L12
AlphaFold pdb e-kbQ96L12   
Human Protein Atlas [tissue]ENSG00000269058-CALR3 [tissue]
HPRD12999
Protein Interaction databases
DIP (DOE-UCLA)Q96L12
IntAct (EBI)Q96L12
BioGRIDCALR3
STRING (EMBL)CALR3
ZODIACCALR3
Ontologies - Pathways
QuickGOQ96L12
Ontology : AmiGOcalcium ion binding  nuclear envelope  endoplasmic reticulum lumen  endoplasmic reticulum membrane  protein folding  spermatogenesis  biological_process  cell differentiation  carbohydrate binding  endoplasmic reticulum unfolded protein response  protein folding chaperone  unfolded protein binding  
Ontology : EGO-EBIcalcium ion binding  nuclear envelope  endoplasmic reticulum lumen  endoplasmic reticulum membrane  protein folding  spermatogenesis  biological_process  cell differentiation  carbohydrate binding  endoplasmic reticulum unfolded protein response  protein folding chaperone  unfolded protein binding  
NDEx NetworkCALR3
Atlas of Cancer Signalling NetworkCALR3
Wikipedia pathwaysCALR3
Orthology - Evolution
OrthoDB125972
GeneTree (enSembl)ENSG00000269058
Phylogenetic Trees/Animal Genes : TreeFamCALR3
Homologs : HomoloGeneCALR3
Homology/Alignments : Family Browser (UCSC)CALR3
Gene fusions - Rearrangements
Fusion : MitelmanEPS15L1::CALR3 [19p13.11/19p13.11]  
Fusion : QuiverCALR3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCALR3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CALR3
dbVarCALR3
ClinVarCALR3
MonarchCALR3
1000_GenomesCALR3 
Exome Variant ServerCALR3
GNOMAD BrowserENSG00000269058
Varsome BrowserCALR3
ACMGCALR3 variants
VarityQ96L12
Genomic Variants (DGV)CALR3 [DGVbeta]
DECIPHERCALR3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCALR3 
Mutations
ICGC Data PortalCALR3 
TCGA Data PortalCALR3 
Broad Tumor PortalCALR3
OASIS PortalCALR3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCALR3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCALR3
Mutations and Diseases : HGMDCALR3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCALR3
DgiDB (Drug Gene Interaction Database)CALR3
DoCM (Curated mutations)CALR3
CIViC (Clinical Interpretations of Variants in Cancer)CALR3
Cancer3DCALR3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611414   
Orphanet
DisGeNETCALR3
MedgenCALR3
Genetic Testing Registry CALR3
NextProtQ96L12 [Medical]
GENETestsCALR3
Target ValidationCALR3
Huge Navigator CALR3 [HugePedia]
ClinGenCALR3
Clinical trials, drugs, therapy
MyCancerGenomeCALR3
Protein Interactions : CTDCALR3
Pharm GKB GenePA134922944
PharosQ96L12
Clinical trialCALR3
Miscellaneous
canSAR (ICR)CALR3
HarmonizomeCALR3
ARCHS4CALR3
DataMed IndexCALR3
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCALR3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Jan 17 15:17:15 CET 2022

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