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CALR3 (calreticulin 3)

Identity

Alias_symbol (synonym)CRT2
FLJ25355
MGC26577
CT93
HGNC (Hugo) CALR3
LocusID (NCBI) 125972
Atlas_Id 50077
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 16589868 and ends at 16607003 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
EPS15L1 (19p13.11) / CALR3 (19p13.11)EPS15L1 19p13.11 / CALR3 19p13.11

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CALR3   20407
LRG (Locus Reference Genomic)LRG_422
Cards
Entrez_Gene (NCBI)CALR3  125972  calreticulin 3
AliasesCMH19; CRT2; CT93
GeneCards (Weizmann)CALR3
Ensembl hg19 (Hinxton)ENSG00000269058 [Gene_View]  chr19:16589868-16607003 [Contig_View]  CALR3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000269058 [Gene_View]  chr19:16589868-16607003 [Contig_View]  CALR3 [Vega]
ICGC DataPortalENSG00000269058
TCGA cBioPortalCALR3
AceView (NCBI)CALR3
Genatlas (Paris)CALR3
WikiGenes125972
SOURCE (Princeton)CALR3
Genetics Home Reference (NIH)CALR3
Genomic and cartography
GoldenPath hg19 (UCSC)CALR3  -     chr19:16589868-16607003 -  19p13.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CALR3  -     19p13.11   [Description]    (hg38-Dec_2013)
EnsemblCALR3 - 19p13.11 [CytoView hg19]  CALR3 - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBICALR3 [Mapview hg19]  CALR3 [Mapview hg38]
OMIM611414   613875   
Gene and transcription
Genbank (Entrez)AA724299 AA910019 AB576176 AK058084 BC014595
RefSeq transcript (Entrez)NM_145046
RefSeq genomic (Entrez)NC_000019 NC_018930 NG_031959 NT_011295 NW_004929414
Consensus coding sequences : CCDS (NCBI)CALR3
Cluster EST : UnigeneHs.304020 [ NCBI ]
CGAP (NCI)Hs.304020
Alternative Splicing GalleryENSG00000269058
Gene ExpressionCALR3 [ NCBI-GEO ]   CALR3 [ EBI - ARRAY_EXPRESS ]   CALR3 [ SEEK ]   CALR3 [ MEM ]
Gene Expression Viewer (FireBrowse)CALR3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)125972
GTEX Portal (Tissue expression)CALR3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96L12   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96L12  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96L12
Splice isoforms : SwissVarQ96L12
PhosPhoSitePlusQ96L12
Domaine pattern : Prosite (Expaxy)CALRETICULIN_1 (PS00803)    CALRETICULIN_2 (PS00804)    ER_TARGET (PS00014)   
Domains : Interpro (EBI)Calret/calnex    Calret/calnex_CS    Calreticulin    Calreticulin/calnexin_P_dom    ConA-like_dom   
Domain families : Pfam (Sanger)Calreticulin (PF00262)   
Domain families : Pfam (NCBI)pfam00262   
Conserved Domain (NCBI)CALR3
DMDM Disease mutations125972
Blocks (Seattle)CALR3
SuperfamilyQ96L12
Human Protein AtlasENSG00000269058
Peptide AtlasQ96L12
HPRD12999
IPIIPI00153053   
Protein Interaction databases
DIP (DOE-UCLA)Q96L12
IntAct (EBI)Q96L12
FunCoupENSG00000269058
BioGRIDCALR3
STRING (EMBL)CALR3
ZODIACCALR3
Ontologies - Pathways
QuickGOQ96L12
Ontology : AmiGOcalcium ion binding  endoplasmic reticulum lumen  protein folding  spermatogenesis  cell differentiation  carbohydrate binding  protein binding involved in protein folding  unfolded protein binding  
Ontology : EGO-EBIcalcium ion binding  endoplasmic reticulum lumen  protein folding  spermatogenesis  cell differentiation  carbohydrate binding  protein binding involved in protein folding  unfolded protein binding  
NDEx NetworkCALR3
Atlas of Cancer Signalling NetworkCALR3
Wikipedia pathwaysCALR3
Orthology - Evolution
OrthoDB125972
GeneTree (enSembl)ENSG00000269058
Phylogenetic Trees/Animal Genes : TreeFamCALR3
HOVERGENQ96L12
HOGENOMQ96L12
Homologs : HomoloGeneCALR3
Homology/Alignments : Family Browser (UCSC)CALR3
Gene fusions - Rearrangements
Fusion : MitelmanEPS15L1/CALR3 [19p13.11/19p13.11]  [t(19;19)(p13;p13)]  
Fusion: TCGAEPS15L1 19p13.11 CALR3 19p13.11 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCALR3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CALR3
dbVarCALR3
ClinVarCALR3
1000_GenomesCALR3 
Exome Variant ServerCALR3
ExAC (Exome Aggregation Consortium)CALR3 (select the gene name)
Genetic variants : HAPMAP125972
Genomic Variants (DGV)CALR3 [DGVbeta]
DECIPHER (Syndromes)19:16589868-16607003  ENSG00000269058
CONAN: Copy Number AnalysisCALR3 
Mutations
ICGC Data PortalCALR3 
TCGA Data PortalCALR3 
Broad Tumor PortalCALR3
OASIS PortalCALR3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCALR3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCALR3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CALR3
DgiDB (Drug Gene Interaction Database)CALR3
DoCM (Curated mutations)CALR3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CALR3 (select a term)
intoGenCALR3
Cancer3DCALR3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611414    613875   
Orphanet
MedgenCALR3
Genetic Testing Registry CALR3
NextProtQ96L12 [Medical]
TSGene125972
GENETestsCALR3
Huge Navigator CALR3 [HugePedia]
snp3D : Map Gene to Disease125972
BioCentury BCIQCALR3
ClinGenCALR3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD125972
Chemical/Pharm GKB GenePA134922944
Clinical trialCALR3
Miscellaneous
canSAR (ICR)CALR3 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCALR3
EVEXCALR3
GoPubMedCALR3
iHOPCALR3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Nov 18 19:32:47 CET 2016

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