Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CALU (calumenin)

Identity

Other alias-
HGNC (Hugo) CALU
LocusID (NCBI) 813
Atlas_Id 55704
Location 7q32.1  [Link to chromosome band 7q32]
Location_base_pair Starts at 128739292 and ends at 128773423 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CALU (7q32.1) / CALU (7q32.1)CALU (7q32.1) / CSTB (21q22.3)CALU (7q32.1) / GPR19 (12p13.1)
CALU (7q32.1) / TRIAP1 (12q24.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CALU   1458
Cards
Entrez_Gene (NCBI)CALU  813  calumenin
Aliases
GeneCards (Weizmann)CALU
Ensembl hg19 (Hinxton)ENSG00000128595 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000128595 [Gene_View]  chr7:128739292-128773423 [Contig_View]  CALU [Vega]
ICGC DataPortalENSG00000128595
TCGA cBioPortalCALU
AceView (NCBI)CALU
Genatlas (Paris)CALU
WikiGenes813
SOURCE (Princeton)CALU
Genetics Home Reference (NIH)CALU
Genomic and cartography
GoldenPath hg38 (UCSC)CALU  -     chr7:128739292-128773423 +  7q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CALU  -     7q32.1   [Description]    (hg19-Feb_2009)
EnsemblCALU - 7q32.1 [CytoView hg19]  CALU - 7q32.1 [CytoView hg38]
Mapping of homologs : NCBICALU [Mapview hg19]  CALU [Mapview hg38]
OMIM603420   
Gene and transcription
Genbank (Entrez)AF013759 AF257659 AF345637 AK027460 AK056338
RefSeq transcript (Entrez)NM_001130674 NM_001199671 NM_001199672 NM_001199673 NM_001199674 NM_001219
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CALU
Cluster EST : UnigeneHs.743262 [ NCBI ]
CGAP (NCI)Hs.743262
Alternative Splicing GalleryENSG00000128595
Gene ExpressionCALU [ NCBI-GEO ]   CALU [ EBI - ARRAY_EXPRESS ]   CALU [ SEEK ]   CALU [ MEM ]
Gene Expression Viewer (FireBrowse)CALU [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)813
GTEX Portal (Tissue expression)CALU
Human Protein AtlasENSG00000128595-CALU [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43852   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43852  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43852
Splice isoforms : SwissVarO43852
PhosPhoSitePlusO43852
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)Calumenin    EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom   
Domain families : Pfam (Sanger)EF-hand_5 (PF13202)    EF-hand_8 (PF13833)   
Domain families : Pfam (NCBI)pfam13202    pfam13833   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)CALU
DMDM Disease mutations813
Blocks (Seattle)CALU
SuperfamilyO43852
Human Protein Atlas [tissue]ENSG00000128595-CALU [tissue]
Peptide AtlasO43852
HPRD04569
IPIIPI00941900   IPI00045396   IPI01009160   IPI01015093   IPI00969136   IPI00969064   IPI00982476   IPI01013361   IPI00946092   IPI00789155   
Protein Interaction databases
DIP (DOE-UCLA)O43852
IntAct (EBI)O43852
FunCoupENSG00000128595
BioGRIDCALU
STRING (EMBL)CALU
ZODIACCALU
Ontologies - Pathways
QuickGOO43852
Ontology : AmiGOcalcium ion binding  protein binding  extracellular region  endoplasmic reticulum  endoplasmic reticulum lumen  endoplasmic reticulum membrane  Golgi apparatus  biological_process  membrane  sarcoplasmic reticulum lumen  melanosome  post-translational protein modification  cellular protein metabolic process  
Ontology : EGO-EBIcalcium ion binding  protein binding  extracellular region  endoplasmic reticulum  endoplasmic reticulum lumen  endoplasmic reticulum membrane  Golgi apparatus  biological_process  membrane  sarcoplasmic reticulum lumen  melanosome  post-translational protein modification  cellular protein metabolic process  
NDEx NetworkCALU
Atlas of Cancer Signalling NetworkCALU
Wikipedia pathwaysCALU
Orthology - Evolution
OrthoDB813
GeneTree (enSembl)ENSG00000128595
Phylogenetic Trees/Animal Genes : TreeFamCALU
HOVERGENO43852
HOGENOMO43852
Homologs : HomoloGeneCALU
Homology/Alignments : Family Browser (UCSC)CALU
Gene fusions - Rearrangements
Fusion : QuiverCALU
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCALU [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CALU
dbVarCALU
ClinVarCALU
1000_GenomesCALU 
Exome Variant ServerCALU
ExAC (Exome Aggregation Consortium)ENSG00000128595
GNOMAD BrowserENSG00000128595
Genetic variants : HAPMAP813
Genomic Variants (DGV)CALU [DGVbeta]
DECIPHERCALU [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCALU 
Mutations
ICGC Data PortalCALU 
TCGA Data PortalCALU 
Broad Tumor PortalCALU
OASIS PortalCALU [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCALU  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCALU
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CALU
DgiDB (Drug Gene Interaction Database)CALU
DoCM (Curated mutations)CALU (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CALU (select a term)
intoGenCALU
Cancer3DCALU(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603420   
Orphanet
DisGeNETCALU
MedgenCALU
Genetic Testing Registry CALU
NextProtO43852 [Medical]
TSGene813
GENETestsCALU
Target ValidationCALU
Huge Navigator CALU [HugePedia]
snp3D : Map Gene to Disease813
BioCentury BCIQCALU
ClinGenCALU
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD813
Chemical/Pharm GKB GenePA26047
Clinical trialCALU
Miscellaneous
canSAR (ICR)CALU (select the gene name)
Probes
Litterature
PubMed82 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCALU
EVEXCALU
GoPubMedCALU
iHOPCALU
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon May 14 11:34:28 CEST 2018
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