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CALY (calcyon neuron specific vesicular protein)

Identity

Alias (NCBI)DRD1IP
NSG3
HGNC (Hugo) CALY
HGNC Alias symbCALCYON
NSG3
HGNC Previous nameDRD1IP
HGNC Previous namedopamine receptor D1 interacting protein
 calcyon neuron-specific vesicular protein
LocusID (NCBI) 50632
Atlas_Id 61395
Location 10q26.3  [Link to chromosome band 10q26]
Location_base_pair Starts at 133324072 and ends at 133336896 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CALY   17938
Cards
Entrez_Gene (NCBI)CALY    calcyon neuron specific vesicular protein
AliasesDRD1IP; NSG3
GeneCards (Weizmann)CALY
Ensembl hg19 (Hinxton)ENSG00000130643 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130643 [Gene_View]  ENSG00000130643 [Sequence]  chr10:133324072-133336896 [Contig_View]  CALY [Vega]
ICGC DataPortalENSG00000130643
TCGA cBioPortalCALY
AceView (NCBI)CALY
Genatlas (Paris)CALY
SOURCE (Princeton)CALY
Genetics Home Reference (NIH)CALY
Genomic and cartography
GoldenPath hg38 (UCSC)CALY  -     chr10:133324072-133336896 -  10q26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CALY  -     10q26.3   [Description]    (hg19-Feb_2009)
GoldenPathCALY - 10q26.3 [CytoView hg19]  CALY - 10q26.3 [CytoView hg38]
ImmunoBaseENSG00000130643
Genome Data Viewer NCBICALY [Mapview hg19]  
OMIM604647   
Gene and transcription
Genbank (Entrez)AF225903 BC038978 BI914942 BP392207
RefSeq transcript (Entrez)NM_001321617 NM_015722
Consensus coding sequences : CCDS (NCBI)CALY
Gene ExpressionCALY [ NCBI-GEO ]   CALY [ EBI - ARRAY_EXPRESS ]   CALY [ SEEK ]   CALY [ MEM ]
Gene Expression Viewer (FireBrowse)CALY [ Firebrowse - Broad ]
GenevisibleExpression of CALY in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)50632
GTEX Portal (Tissue expression)CALY
Human Protein AtlasENSG00000130643-CALY [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NYX4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NYX4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NYX4
PhosPhoSitePlusQ9NYX4
Domains : Interpro (EBI)NSG   
Domain families : Pfam (Sanger)Calcyon (PF06387)   
Domain families : Pfam (NCBI)pfam06387   
Conserved Domain (NCBI)CALY
SuperfamilyQ9NYX4
AlphaFold pdb e-kbQ9NYX4   
Human Protein Atlas [tissue]ENSG00000130643-CALY [tissue]
HPRD06871
Protein Interaction databases
DIP (DOE-UCLA)Q9NYX4
IntAct (EBI)Q9NYX4
BioGRIDCALY
STRING (EMBL)CALY
ZODIACCALY
Ontologies - Pathways
QuickGOQ9NYX4
Ontology : AmiGOprotein binding  endosome  integral component of plasma membrane  dopamine receptor signaling pathway  anterograde axonal transport  integral component of membrane  endosomal transport  cytoplasmic vesicle membrane  cytoplasmic vesicle  clathrin light chain binding  clathrin light chain binding  protein-containing complex binding  positive regulation of endocytosis  clathrin coat assembly  clathrin coat assembly  postsynaptic endocytic zone  postsynaptic endocytic zone  postsynaptic neurotransmitter receptor internalization  glutamatergic synapse  axon cytoplasm  positive regulation of clathrin coat assembly  positive regulation of retrograde axon cargo transport  
Ontology : EGO-EBIprotein binding  endosome  integral component of plasma membrane  dopamine receptor signaling pathway  anterograde axonal transport  integral component of membrane  endosomal transport  cytoplasmic vesicle membrane  cytoplasmic vesicle  clathrin light chain binding  clathrin light chain binding  protein-containing complex binding  positive regulation of endocytosis  clathrin coat assembly  clathrin coat assembly  postsynaptic endocytic zone  postsynaptic endocytic zone  postsynaptic neurotransmitter receptor internalization  glutamatergic synapse  axon cytoplasm  positive regulation of clathrin coat assembly  positive regulation of retrograde axon cargo transport  
NDEx NetworkCALY
Atlas of Cancer Signalling NetworkCALY
Wikipedia pathwaysCALY
Orthology - Evolution
OrthoDB50632
GeneTree (enSembl)ENSG00000130643
Phylogenetic Trees/Animal Genes : TreeFamCALY
Homologs : HomoloGeneCALY
Homology/Alignments : Family Browser (UCSC)CALY
Gene fusions - Rearrangements
Fusion : QuiverCALY
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCALY [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CALY
dbVarCALY
ClinVarCALY
MonarchCALY
1000_GenomesCALY 
Exome Variant ServerCALY
GNOMAD BrowserENSG00000130643
Varsome BrowserCALY
ACMGCALY variants
VarityQ9NYX4
Genomic Variants (DGV)CALY [DGVbeta]
DECIPHERCALY [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCALY 
Mutations
ICGC Data PortalCALY 
TCGA Data PortalCALY 
Broad Tumor PortalCALY
OASIS PortalCALY [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCALY  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCALY
Mutations and Diseases : HGMDCALY
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCALY
DgiDB (Drug Gene Interaction Database)CALY
DoCM (Curated mutations)CALY
CIViC (Clinical Interpretations of Variants in Cancer)CALY
Cancer3DCALY
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604647   
Orphanet
DisGeNETCALY
MedgenCALY
Genetic Testing Registry CALY
NextProtQ9NYX4 [Medical]
GENETestsCALY
Target ValidationCALY
Huge Navigator CALY [HugePedia]
ClinGenCALY
Clinical trials, drugs, therapy
MyCancerGenomeCALY
Protein Interactions : CTDCALY
Pharm GKB GenePA162380987
PharosQ9NYX4
Clinical trialCALY
Miscellaneous
canSAR (ICR)CALY
HarmonizomeCALY
DataMed IndexCALY
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCALY
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:44:44 CEST 2021

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