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CALY (calcyon neuron-specific vesicular protein)

Identity

Alias_namesDRD1IP
dopamine receptor D1 interacting protein
calcyon neuron-specific vesicular protein
Alias_symbol (synonym)CALCYON
NSG3
Other alias
HGNC (Hugo) CALY
LocusID (NCBI) 50632
Atlas_Id 61395
Location 10q26.3  [Link to chromosome band 10q26]
Location_base_pair Starts at 135138928 and ends at 135150475 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CALY   17938
Cards
Entrez_Gene (NCBI)CALY  50632  calcyon neuron-specific vesicular protein
AliasesDRD1IP; NSG3
GeneCards (Weizmann)CALY
Ensembl hg19 (Hinxton)ENSG00000130643 [Gene_View]  chr10:135138928-135150475 [Contig_View]  CALY [Vega]
Ensembl hg38 (Hinxton)ENSG00000130643 [Gene_View]  chr10:135138928-135150475 [Contig_View]  CALY [Vega]
ICGC DataPortalENSG00000130643
TCGA cBioPortalCALY
AceView (NCBI)CALY
Genatlas (Paris)CALY
WikiGenes50632
SOURCE (Princeton)CALY
Genetics Home Reference (NIH)CALY
Genomic and cartography
GoldenPath hg19 (UCSC)CALY  -     chr10:135138928-135150475 -  10q26.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CALY  -     10q26.3   [Description]    (hg38-Dec_2013)
EnsemblCALY - 10q26.3 [CytoView hg19]  CALY - 10q26.3 [CytoView hg38]
Mapping of homologs : NCBICALY [Mapview hg19]  CALY [Mapview hg38]
OMIM604647   
Gene and transcription
Genbank (Entrez)AF225903 BC038978 BI914942 BP392207 HG503392
RefSeq transcript (Entrez)NM_015722
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929377
Consensus coding sequences : CCDS (NCBI)CALY
Cluster EST : UnigeneHs.148680 [ NCBI ]
CGAP (NCI)Hs.148680
Alternative Splicing GalleryENSG00000130643
Gene ExpressionCALY [ NCBI-GEO ]   CALY [ EBI - ARRAY_EXPRESS ]   CALY [ SEEK ]   CALY [ MEM ]
Gene Expression Viewer (FireBrowse)CALY [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)50632
GTEX Portal (Tissue expression)CALY
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NYX4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NYX4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NYX4
Splice isoforms : SwissVarQ9NYX4
PhosPhoSitePlusQ9NYX4
Domains : Interpro (EBI)Calcyon_neuron-sp   
Domain families : Pfam (Sanger)Calcyon (PF06387)   
Domain families : Pfam (NCBI)pfam06387   
Conserved Domain (NCBI)CALY
DMDM Disease mutations50632
Blocks (Seattle)CALY
SuperfamilyQ9NYX4
Human Protein AtlasENSG00000130643
Peptide AtlasQ9NYX4
HPRD06871
IPIIPI00024587   IPI00647166   IPI00477695   
Protein Interaction databases
DIP (DOE-UCLA)Q9NYX4
IntAct (EBI)Q9NYX4
FunCoupENSG00000130643
BioGRIDCALY
STRING (EMBL)CALY
ZODIACCALY
Ontologies - Pathways
QuickGOQ9NYX4
Ontology : AmiGOintegral component of plasma membrane  endocytosis  dopamine receptor signaling pathway  cytoplasmic vesicle membrane  cytoplasmic vesicle  clathrin light chain binding  protein complex binding  positive regulation of endocytosis  clathrin coat assembly  
Ontology : EGO-EBIintegral component of plasma membrane  endocytosis  dopamine receptor signaling pathway  cytoplasmic vesicle membrane  cytoplasmic vesicle  clathrin light chain binding  protein complex binding  positive regulation of endocytosis  clathrin coat assembly  
Pathways : KEGGDopaminergic synapse   
NDEx NetworkCALY
Atlas of Cancer Signalling NetworkCALY
Wikipedia pathwaysCALY
Orthology - Evolution
OrthoDB50632
GeneTree (enSembl)ENSG00000130643
Phylogenetic Trees/Animal Genes : TreeFamCALY
HOVERGENQ9NYX4
HOGENOMQ9NYX4
Homologs : HomoloGeneCALY
Homology/Alignments : Family Browser (UCSC)CALY
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCALY [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CALY
dbVarCALY
ClinVarCALY
1000_GenomesCALY 
Exome Variant ServerCALY
ExAC (Exome Aggregation Consortium)CALY (select the gene name)
Genetic variants : HAPMAP50632
Genomic Variants (DGV)CALY [DGVbeta]
DECIPHER (Syndromes)10:135138928-135150475  ENSG00000130643
CONAN: Copy Number AnalysisCALY 
Mutations
ICGC Data PortalCALY 
TCGA Data PortalCALY 
Broad Tumor PortalCALY
OASIS PortalCALY [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCALY  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCALY
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CALY
DgiDB (Drug Gene Interaction Database)CALY
DoCM (Curated mutations)CALY (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CALY (select a term)
intoGenCALY
Cancer3DCALY(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604647   
Orphanet
MedgenCALY
Genetic Testing Registry CALY
NextProtQ9NYX4 [Medical]
TSGene50632
GENETestsCALY
Huge Navigator CALY [HugePedia]
snp3D : Map Gene to Disease50632
BioCentury BCIQCALY
ClinGenCALY
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD50632
Chemical/Pharm GKB GenePA162380987
Clinical trialCALY
Miscellaneous
canSAR (ICR)CALY (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCALY
EVEXCALY
GoPubMedCALY
iHOPCALY
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:58:01 CET 2017

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