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CAMK1D (calcium/calmodulin dependent protein kinase ID)

Identity

Alias (NCBI)CKLiK
CaM-K1
CaMKID
HGNC (Hugo) CAMK1D
HGNC Alias symbCKLiK
HGNC Previous namecalcium/calmodulin-dependent protein kinase ID
LocusID (NCBI) 57118
Atlas_Id 43179
Location 10p13  [Link to chromosome band 10p13]
Location_base_pair Starts at 12349547 and ends at 12835545 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CAMK1D (10p13) / CAMK1D (10p13)CAMK1D (10p13) / FAM188A (10p13)CAMK1D (10p13) / LRRFIP2 (3p22.2)
CAMK1D (10p13) / PDLIM5 (4q22.3)CAMK1D (10p13) / PROSER2 (10p14)CAMK1D (10p13) / TSPAN18 (11p11.2)
HMGB2 (4q34.1) / CAMK1D (10p13)IDE (10q23.33) / CAMK1D (10p13)PHF21A (11p11.2) / CAMK1D (10p13)
SMO (7q32.1) / CAMK1D (10p13)CAMK1D 10p13 C10orf47CAMK1D 10p13 / FAM188A 10p13
CAMK1D 10p13 / TSPAN18 11p11.2IDE 10q23.33 / CAMK1D 10p13PHF21A 11p11.2 / CAMK1D 10p13

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CAMK1D   19341
Cards
Entrez_Gene (NCBI)CAMK1D    calcium/calmodulin dependent protein kinase ID
AliasesCKLiK; CaM-K1; CaMKID
GeneCards (Weizmann)CAMK1D
Ensembl hg19 (Hinxton)ENSG00000183049 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183049 [Gene_View]  ENSG00000183049 [Sequence]  chr10:12349547-12835545 [Contig_View]  CAMK1D [Vega]
ICGC DataPortalENSG00000183049
TCGA cBioPortalCAMK1D
AceView (NCBI)CAMK1D
Genatlas (Paris)CAMK1D
SOURCE (Princeton)CAMK1D
Genetics Home Reference (NIH)CAMK1D
Genomic and cartography
GoldenPath hg38 (UCSC)CAMK1D  -     chr10:12349547-12835545 +  10p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CAMK1D  -     10p13   [Description]    (hg19-Feb_2009)
GoldenPathCAMK1D - 10p13 [CytoView hg19]  CAMK1D - 10p13 [CytoView hg38]
ImmunoBaseENSG00000183049
Genome Data Viewer NCBICAMK1D [Mapview hg19]  
OMIM607957   
Gene and transcription
Genbank (Entrez)AA601559 AA903749 AB081726 AF286366 AI821714
RefSeq transcript (Entrez)NM_001351032 NM_020397 NM_153498
Consensus coding sequences : CCDS (NCBI)CAMK1D
Gene ExpressionCAMK1D [ NCBI-GEO ]   CAMK1D [ EBI - ARRAY_EXPRESS ]   CAMK1D [ SEEK ]   CAMK1D [ MEM ]
Gene Expression Viewer (FireBrowse)CAMK1D [ Firebrowse - Broad ]
GenevisibleExpression of CAMK1D in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57118
GTEX Portal (Tissue expression)CAMK1D
Human Protein AtlasENSG00000183049-CAMK1D [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IU85   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IU85  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IU85
Catalytic activity : Enzyme2.7.11.17 [ Enzyme-Expasy ]   2.7.11.172.7.11.17 [ IntEnz-EBI ]   2.7.11.17 [ BRENDA ]   2.7.11.17 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ8IU85
Domaine pattern : Prosite (Expaxy)PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)   
Domains : Interpro (EBI)Kinase-like_dom_sf    Prot_kinase_dom    Protein_kinase_ATP_BS    Ser/Thr_kinase_AS   
Domain families : Pfam (Sanger)Pkinase (PF00069)   
Domain families : Pfam (NCBI)pfam00069   
Domain families : Smart (EMBL)S_TKc (SM00220)  
Conserved Domain (NCBI)CAMK1D
PDB (RSDB)2JC6    6QP5    6T28    6T29    6T6F   
PDB Europe2JC6    6QP5    6T28    6T29    6T6F   
PDB (PDBSum)2JC6    6QP5    6T28    6T29    6T6F   
PDB (IMB)2JC6    6QP5    6T28    6T29    6T6F   
Structural Biology KnowledgeBase2JC6    6QP5    6T28    6T29    6T6F   
SCOP (Structural Classification of Proteins)2JC6    6QP5    6T28    6T29    6T6F   
CATH (Classification of proteins structures)2JC6    6QP5    6T28    6T29    6T6F   
SuperfamilyQ8IU85
AlphaFold pdb e-kbQ8IU85   
Human Protein Atlas [tissue]ENSG00000183049-CAMK1D [tissue]
HPRD06409
Protein Interaction databases
DIP (DOE-UCLA)Q8IU85
IntAct (EBI)Q8IU85
BioGRIDCAMK1D
STRING (EMBL)CAMK1D
ZODIACCAMK1D
Ontologies - Pathways
QuickGOQ8IU85
Ontology : AmiGOcalmodulin-dependent protein kinase activity  calmodulin-dependent protein kinase activity  calmodulin binding  ATP binding  intracellular anatomical structure  nucleus  cytoplasm  cytoplasm  inflammatory response  nervous system development  positive regulation of neuron projection development  peptidyl-serine phosphorylation  positive regulation of CREB transcription factor activity  positive regulation of apoptotic process  negative regulation of apoptotic process  positive regulation of phagocytosis  regulation of dendrite development  positive regulation of respiratory burst  regulation of granulocyte chemotaxis  positive regulation of neutrophil chemotaxis  protein serine kinase activity  protein threonine kinase activity  
Ontology : EGO-EBIcalmodulin-dependent protein kinase activity  calmodulin-dependent protein kinase activity  calmodulin binding  ATP binding  intracellular anatomical structure  nucleus  cytoplasm  cytoplasm  inflammatory response  nervous system development  positive regulation of neuron projection development  peptidyl-serine phosphorylation  positive regulation of CREB transcription factor activity  positive regulation of apoptotic process  negative regulation of apoptotic process  positive regulation of phagocytosis  regulation of dendrite development  positive regulation of respiratory burst  regulation of granulocyte chemotaxis  positive regulation of neutrophil chemotaxis  protein serine kinase activity  protein threonine kinase activity  
NDEx NetworkCAMK1D
Atlas of Cancer Signalling NetworkCAMK1D
Wikipedia pathwaysCAMK1D
Orthology - Evolution
OrthoDB57118
GeneTree (enSembl)ENSG00000183049
Phylogenetic Trees/Animal Genes : TreeFamCAMK1D
Homologs : HomoloGeneCAMK1D
Homology/Alignments : Family Browser (UCSC)CAMK1D
Gene fusions - Rearrangements
Fusion : MitelmanCAMK1D/TSPAN18 [10p13/11p11.2]  
Fusion : MitelmanIDE/CAMK1D [10q23.33/10p13]  
Fusion : MitelmanPHF21A/CAMK1D [11p11.2/10p13]  
Fusion : QuiverCAMK1D
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCAMK1D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CAMK1D
dbVarCAMK1D
ClinVarCAMK1D
MonarchCAMK1D
1000_GenomesCAMK1D 
Exome Variant ServerCAMK1D
GNOMAD BrowserENSG00000183049
Varsome BrowserCAMK1D
ACMGCAMK1D variants
VarityQ8IU85
Genomic Variants (DGV)CAMK1D [DGVbeta]
DECIPHERCAMK1D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCAMK1D 
Mutations
ICGC Data PortalCAMK1D 
TCGA Data PortalCAMK1D 
Broad Tumor PortalCAMK1D
OASIS PortalCAMK1D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCAMK1D  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCAMK1D
Mutations and Diseases : HGMDCAMK1D
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCAMK1D
DgiDB (Drug Gene Interaction Database)CAMK1D
DoCM (Curated mutations)CAMK1D
CIViC (Clinical Interpretations of Variants in Cancer)CAMK1D
Cancer3DCAMK1D
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607957   
Orphanet
DisGeNETCAMK1D
MedgenCAMK1D
Genetic Testing Registry CAMK1D
NextProtQ8IU85 [Medical]
GENETestsCAMK1D
Target ValidationCAMK1D
Huge Navigator CAMK1D [HugePedia]
ClinGenCAMK1D
Clinical trials, drugs, therapy
MyCancerGenomeCAMK1D
Protein Interactions : CTDCAMK1D
Pharm GKB GenePA134992438
Pharm GKB PathwaysPA162356267   
PharosQ8IU85
Clinical trialCAMK1D
Miscellaneous
canSAR (ICR)CAMK1D
HarmonizomeCAMK1D
DataMed IndexCAMK1D
Probes
Litterature
PubMed66 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCAMK1D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:02:07 CEST 2021

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