Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CAMK1D (calcium/calmodulin-dependent protein kinase ID)

Identity

Other namesCKLiK
CaM-K1
CaMKID
HGNC (Hugo) CAMK1D
LocusID (NCBI) 57118
Location 10p13
Location_base_pair Starts at 12391583 and ends at 12868137 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CAMK1D   19341
Entrez_Gene (NCBI)CAMK1D  57118  calcium/calmodulin-dependent protein kinase ID
Cards
GeneCards (Weizmann)CAMK1D
Ensembl (Hinxton)ENSG00000183049 [Gene_View]  chr10:12391583-12868137 [Contig_View]  CAMK1D [Vega]
AceView (NCBI)CAMK1D
Genatlas (Paris)CAMK1D
SOURCE (Stanford)NM_020397 NM_153498
Genomic and cartography
GoldenPath (UCSC)CAMK1D  -  10p13   chr10:12391583-12868137 +  10p13   [Description]    (hg19-Feb_2009)
EnsemblCAMK1D - 10p13 [CytoView]
Mapping of homologs : NCBICAMK1D [Mapview]
OMIM607957   
Gene and transcription
Genbank (Entrez)AB081726 AF286366 AI821714 AK289393 BC035745
RefSeq transcript (SRS)NM_020397 NM_153498
RefSeq transcript (Entrez)NM_020397 NM_153498
RefSeq genomic (SRS)AC_000142 NC_000010 NC_018921 NT_008705 NW_001837931 NW_004078062
RefSeq genomic (Entrez)AC_000142 NC_000010 NC_018921 NT_008705 NW_001837931 NW_004078062
Consensus coding sequences : CCDS (NCBI)CAMK1D
Cluster EST : UnigeneHs.659517 [ SRS ] Hs.659517 [ NCBI ]
CGAP (NCI)Hs.659517
Alternative Splicing : Fast-db (Paris)GSHG0003208
Alternative Splicing GalleryENSG00000183049
Gene ExpressionCAMK1D [ NCBI-GEO ]   CAMK1D [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IU85 (SRS) Q8IU85 (Uniprot)
NextProtQ8IU85
With graphics : InterProQ8IU85
Splice isoforms : SwissVarQ8IU85(Swissvar)
Domaine pattern : Prosite (SRS)PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)   
Domaine pattern : Prosite (Expaxy)PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)   
Domains : Interpro (SRS)Ca/CaM-dep_Ca-dep_prot_Kinase    Kinase-like_dom    Prot_kinase_cat_dom    Protein_kinase_ATP_BS    Ser/Thr_dual-sp_kinase_dom    Ser/Thr_kinase_AS   
Domains : Interpro (EBI)Ca/CaM-dep_Ca-dep_prot_Kinase    Kinase-like_dom    Prot_kinase_cat_dom    Protein_kinase_ATP_BS    Ser/Thr_dual-sp_kinase_dom    Ser/Thr_kinase_AS   
Related proteins : CluSTrQ8IU85
Domain families : Pfam (SRS)Pkinase (PF00069)   
Domain families : Pfam (Sanger)Pkinase (PF00069)   
Domain families : Pfam (NCBI)pfam00069   
Domain families : Smart (EMBL)S_TKc (SM00220)  
DMDM57118
Blocks (Seattle)Q8IU85
PDB (SRS)2JC6   
PDB (PDBSum)2JC6   
PDB (IMB)2JC6   
PDB (RSDB)2JC6   
Human Protein AtlasENSG00000183049
HPRD06409
IPIIPI00170508   IPI00170675   
Protein Interaction databases
DIP (DOE-UCLA)Q8IU85
IntAct (EBI)Q8IU85
FunCoupENSG00000183049
REACTOMECAMK1D
Protein Interaction Database57118
BioGRIDCAMK1D
InParanoidQ8IU85
Interologous Interaction database Q8IU85
IntegromeDBCAMK1D
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CAMK1D
SNP (GeneSNP Utah)CAMK1D
SNP : HGBaseCAMK1D
Genetic variants : HAPMAPCAMK1D
Somatic Mutations in Cancer : COSMICCAMK1D 
CONAN: Copy Number AnalysisCAMK1D 
Mutations and Diseases : HGMDCAMK1D
OMIM607957   
GENETests607957   
Disease Genetic AssociationCAMK1D
Huge Navigator CAMK1D [HugePedia]  CAMK1D [HugeCancerGEM]
Genomic VariantsCAMK1D  CAMK1D [DGVbeta]
snp3D : Map Gene to Disease57118
General knowledge
Homologs : HomoloGeneCAMK1D
Homology/Alignments : Family Browser (UCSC)CAMK1D
Phylogenetic Trees/Animal Genes : TreeFamCAMK1D
Catalytic activity : Enzyme2.7.11.17 [ Enzyme-Expasy ]   2.7.11.17 [ Enzyme-SRS ]   2.7.11.17 [ IntEnz-EBI ]   2.7.11.17 [ BRENDA ]   2.7.11.17 [ KEGG ]   
Chemical/Protein Interactions : CTD57118
Chemical/Pharm GKB GenePA134992438
Clinical trialCAMK1D
Cancer Resource (Charite)ENSG00000183049
Ontology : AmiGOcalmodulin-dependent protein kinase activity  calmodulin binding  ATP binding  nucleus  cytoplasm  calcium- and calmodulin-dependent protein kinase complex  inflammatory response  positive regulation of neuron projection development  positive regulation of CREB transcription factor activity  regulation of apoptotic process  positive regulation of phagocytosis  regulation of dendrite development  positive regulation of respiratory burst  regulation of granulocyte chemotaxis  positive regulation of neutrophil chemotaxis  
Ontology : EGO-EBIcalmodulin-dependent protein kinase activity  calmodulin binding  ATP binding  nucleus  cytoplasm  calcium- and calmodulin-dependent protein kinase complex  inflammatory response  positive regulation of neuron projection development  positive regulation of CREB transcription factor activity  regulation of apoptotic process  positive regulation of phagocytosis  regulation of dendrite development  positive regulation of respiratory burst  regulation of granulocyte chemotaxis  positive regulation of neutrophil chemotaxis  
Other databases
Probes
Litterature
PubMed39 Pubmed reference(s) in Entrez
PubGeneCAMK1D
iHOPCAMK1D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:30:17 CEST 2013
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