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CAMK1D (calcium/calmodulin dependent protein kinase ID)

Identity

Alias_namescalcium/calmodulin-dependent protein kinase ID
Alias_symbol (synonym)CKLiK
Other aliasCaM-K1
CaMKID
HGNC (Hugo) CAMK1D
LocusID (NCBI) 57118
Atlas_Id 43179
Location 10p13  [Link to chromosome band 10p13]
Location_base_pair Starts at 12349543 and ends at 12826464 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CAMK1D (10p13) / CAMK1D (10p13)CAMK1D (10p13) / FAM188A (10p13)CAMK1D (10p13) / LRRFIP2 (3p22.2)
CAMK1D (10p13) / PDLIM5 (4q22.3)CAMK1D (10p13) / PROSER2 (10p14)CAMK1D (10p13) / TSPAN18 (11p11.2)
HMGB2 (4q34.1) / CAMK1D (10p13)IDE (10q23.33) / CAMK1D (10p13)PHF21A (11p11.2) / CAMK1D (10p13)
SMO (7q32.1) / CAMK1D (10p13)CAMK1D 10p13 C10orf47CAMK1D 10p13 / FAM188A 10p13
CAMK1D 10p13 / TSPAN18 11p11.2IDE 10q23.33 / CAMK1D 10p13PHF21A 11p11.2 / CAMK1D 10p13

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CAMK1D   19341
Cards
Entrez_Gene (NCBI)CAMK1D  57118  calcium/calmodulin dependent protein kinase ID
AliasesCKLiK; CaM-K1; CaMKID
GeneCards (Weizmann)CAMK1D
Ensembl hg19 (Hinxton)ENSG00000183049 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183049 [Gene_View]  chr10:12349543-12826464 [Contig_View]  CAMK1D [Vega]
ICGC DataPortalENSG00000183049
TCGA cBioPortalCAMK1D
AceView (NCBI)CAMK1D
Genatlas (Paris)CAMK1D
WikiGenes57118
SOURCE (Princeton)CAMK1D
Genetics Home Reference (NIH)CAMK1D
Genomic and cartography
GoldenPath hg38 (UCSC)CAMK1D  -     chr10:12349543-12826464 +  10p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CAMK1D  -     10p13   [Description]    (hg19-Feb_2009)
EnsemblCAMK1D - 10p13 [CytoView hg19]  CAMK1D - 10p13 [CytoView hg38]
Mapping of homologs : NCBICAMK1D [Mapview hg19]  CAMK1D [Mapview hg38]
OMIM607957   
Gene and transcription
Genbank (Entrez)AA601559 AA903749 AB081726 AF286366 AI821714
RefSeq transcript (Entrez)NM_020397 NM_153498
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CAMK1D
Cluster EST : UnigeneHs.659517 [ NCBI ]
CGAP (NCI)Hs.659517
Alternative Splicing GalleryENSG00000183049
Gene ExpressionCAMK1D [ NCBI-GEO ]   CAMK1D [ EBI - ARRAY_EXPRESS ]   CAMK1D [ SEEK ]   CAMK1D [ MEM ]
Gene Expression Viewer (FireBrowse)CAMK1D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57118
GTEX Portal (Tissue expression)CAMK1D
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IU85   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IU85  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IU85
Splice isoforms : SwissVarQ8IU85
Catalytic activity : Enzyme2.7.11.17 [ Enzyme-Expasy ]   2.7.11.172.7.11.17 [ IntEnz-EBI ]   2.7.11.17 [ BRENDA ]   2.7.11.17 [ KEGG ]   
PhosPhoSitePlusQ8IU85
Domaine pattern : Prosite (Expaxy)PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)   
Domains : Interpro (EBI)Ca/CaM-dep_Ca-dep_prot_Kinase    Kinase-like_dom    Prot_kinase_dom    Protein_kinase_ATP_BS    Ser/Thr_kinase_AS   
Domain families : Pfam (Sanger)Pkinase (PF00069)   
Domain families : Pfam (NCBI)pfam00069   
Domain families : Smart (EMBL)S_TKc (SM00220)  
Conserved Domain (NCBI)CAMK1D
DMDM Disease mutations57118
Blocks (Seattle)CAMK1D
PDB (SRS)2JC6   
PDB (PDBSum)2JC6   
PDB (IMB)2JC6   
PDB (RSDB)2JC6   
Structural Biology KnowledgeBase2JC6   
SCOP (Structural Classification of Proteins)2JC6   
CATH (Classification of proteins structures)2JC6   
SuperfamilyQ8IU85
Human Protein AtlasENSG00000183049
Peptide AtlasQ8IU85
HPRD06409
IPIIPI00170508   IPI00170675   
Protein Interaction databases
DIP (DOE-UCLA)Q8IU85
IntAct (EBI)Q8IU85
FunCoupENSG00000183049
BioGRIDCAMK1D
STRING (EMBL)CAMK1D
ZODIACCAMK1D
Ontologies - Pathways
QuickGOQ8IU85
Ontology : AmiGOcalmodulin-dependent protein kinase activity  calmodulin binding  ATP binding  nucleus  cytoplasm  inflammatory response  positive regulation of neuron projection development  peptidyl-serine phosphorylation  peptidyl-threonine phosphorylation  positive regulation of CREB transcription factor activity  intracellular signal transduction  positive regulation of apoptotic process  negative regulation of apoptotic process  positive regulation of phagocytosis  regulation of dendrite development  positive regulation of respiratory burst  regulation of granulocyte chemotaxis  positive regulation of neutrophil chemotaxis  
Ontology : EGO-EBIcalmodulin-dependent protein kinase activity  calmodulin binding  ATP binding  nucleus  cytoplasm  inflammatory response  positive regulation of neuron projection development  peptidyl-serine phosphorylation  peptidyl-threonine phosphorylation  positive regulation of CREB transcription factor activity  intracellular signal transduction  positive regulation of apoptotic process  negative regulation of apoptotic process  positive regulation of phagocytosis  regulation of dendrite development  positive regulation of respiratory burst  regulation of granulocyte chemotaxis  positive regulation of neutrophil chemotaxis  
NDEx NetworkCAMK1D
Atlas of Cancer Signalling NetworkCAMK1D
Wikipedia pathwaysCAMK1D
Orthology - Evolution
OrthoDB57118
GeneTree (enSembl)ENSG00000183049
Phylogenetic Trees/Animal Genes : TreeFamCAMK1D
HOVERGENQ8IU85
HOGENOMQ8IU85
Homologs : HomoloGeneCAMK1D
Homology/Alignments : Family Browser (UCSC)CAMK1D
Gene fusions - Rearrangements
Fusion : MitelmanCAMK1D/TSPAN18 [10p13/11p11.2]  
Fusion : MitelmanIDE/CAMK1D [10q23.33/10p13]  [t(10;10)(p13;q23)]  
Fusion : MitelmanPHF21A/CAMK1D [11p11.2/10p13]  [t(10;11)(p13;p11)]  
Fusion: TCGACAMK1D 10p13 C10orf47 BRCA
Fusion: TCGACAMK1D 10p13 FAM188A 10p13 BRCA
Fusion: TCGACAMK1D 10p13 TSPAN18 11p11.2 BRCA
Fusion: TCGAIDE 10q23.33 CAMK1D 10p13 PRAD
Fusion: TCGAPHF21A 11p11.2 CAMK1D 10p13 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCAMK1D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CAMK1D
dbVarCAMK1D
ClinVarCAMK1D
1000_GenomesCAMK1D 
Exome Variant ServerCAMK1D
ExAC (Exome Aggregation Consortium)CAMK1D (select the gene name)
Genetic variants : HAPMAP57118
Genomic Variants (DGV)CAMK1D [DGVbeta]
DECIPHERCAMK1D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCAMK1D 
Mutations
ICGC Data PortalCAMK1D 
TCGA Data PortalCAMK1D 
Broad Tumor PortalCAMK1D
OASIS PortalCAMK1D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCAMK1D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCAMK1D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CAMK1D
DgiDB (Drug Gene Interaction Database)CAMK1D
DoCM (Curated mutations)CAMK1D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CAMK1D (select a term)
intoGenCAMK1D
Cancer3DCAMK1D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607957   
Orphanet
MedgenCAMK1D
Genetic Testing Registry CAMK1D
NextProtQ8IU85 [Medical]
TSGene57118
GENETestsCAMK1D
Huge Navigator CAMK1D [HugePedia]
snp3D : Map Gene to Disease57118
BioCentury BCIQCAMK1D
ClinGenCAMK1D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57118
Chemical/Pharm GKB GenePA134992438
Clinical trialCAMK1D
Miscellaneous
canSAR (ICR)CAMK1D (select the gene name)
Probes
Litterature
PubMed57 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCAMK1D
EVEXCAMK1D
GoPubMedCAMK1D
iHOPCAMK1D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:08:45 CEST 2017

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