Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CAMK1G (calcium/calmodulin dependent protein kinase IG)

Identity

Alias_namescalcium/calmodulin-dependent protein kinase IG
Alias_symbol (synonym)VWS1
CLICKIII
dJ272L16.1
Other aliasCLICK3
HGNC (Hugo) CAMK1G
LocusID (NCBI) 57172
Atlas_Id 43180
Location 1q32.2  [Link to chromosome band 1q32]
Location_base_pair Starts at 209583700 and ends at 209613939 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CAMK1G   14585
Cards
Entrez_Gene (NCBI)CAMK1G  57172  calcium/calmodulin dependent protein kinase IG
AliasesCLICK3; CLICKIII; VWS1; dJ272L16.1
GeneCards (Weizmann)CAMK1G
Ensembl hg19 (Hinxton)ENSG00000008118 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000008118 [Gene_View]  chr1:209583700-209613939 [Contig_View]  CAMK1G [Vega]
ICGC DataPortalENSG00000008118
TCGA cBioPortalCAMK1G
AceView (NCBI)CAMK1G
Genatlas (Paris)CAMK1G
WikiGenes57172
SOURCE (Princeton)CAMK1G
Genetics Home Reference (NIH)CAMK1G
Genomic and cartography
GoldenPath hg38 (UCSC)CAMK1G  -     chr1:209583700-209613939 +  1q32.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CAMK1G  -     1q32.2   [Description]    (hg19-Feb_2009)
EnsemblCAMK1G - 1q32.2 [CytoView hg19]  CAMK1G - 1q32.2 [CytoView hg38]
Mapping of homologs : NCBICAMK1G [Mapview hg19]  CAMK1G [Mapview hg38]
OMIM614994   
Gene and transcription
Genbank (Entrez)AF428261 AK095713 AK289675 AL049688 AY212935
RefSeq transcript (Entrez)NM_020439
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CAMK1G
Cluster EST : UnigeneHs.199068 [ NCBI ]
CGAP (NCI)Hs.199068
Alternative Splicing GalleryENSG00000008118
Gene ExpressionCAMK1G [ NCBI-GEO ]   CAMK1G [ EBI - ARRAY_EXPRESS ]   CAMK1G [ SEEK ]   CAMK1G [ MEM ]
Gene Expression Viewer (FireBrowse)CAMK1G [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57172
GTEX Portal (Tissue expression)CAMK1G
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96NX5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96NX5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96NX5
Splice isoforms : SwissVarQ96NX5
Catalytic activity : Enzyme2.7.11.17 [ Enzyme-Expasy ]   2.7.11.172.7.11.17 [ IntEnz-EBI ]   2.7.11.17 [ BRENDA ]   2.7.11.17 [ KEGG ]   
PhosPhoSitePlusQ96NX5
Domaine pattern : Prosite (Expaxy)PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)   
Domains : Interpro (EBI)Ca/CaM-dep_Ca-dep_prot_Kinase    Kinase-like_dom    Prot_kinase_dom    Protein_kinase_ATP_BS    Ser/Thr_kinase_AS   
Domain families : Pfam (Sanger)Pkinase (PF00069)   
Domain families : Pfam (NCBI)pfam00069   
Domain families : Smart (EMBL)S_TKc (SM00220)  
Conserved Domain (NCBI)CAMK1G
DMDM Disease mutations57172
Blocks (Seattle)CAMK1G
PDB (SRS)2JAM   
PDB (PDBSum)2JAM   
PDB (IMB)2JAM   
PDB (RSDB)2JAM   
Structural Biology KnowledgeBase2JAM   
SCOP (Structural Classification of Proteins)2JAM   
CATH (Classification of proteins structures)2JAM   
SuperfamilyQ96NX5
Human Protein AtlasENSG00000008118
Peptide AtlasQ96NX5
HPRD10807
IPIIPI00000026   IPI00479272   IPI00645971   
Protein Interaction databases
DIP (DOE-UCLA)Q96NX5
IntAct (EBI)Q96NX5
FunCoupENSG00000008118
BioGRIDCAMK1G
STRING (EMBL)CAMK1G
ZODIACCAMK1G
Ontologies - Pathways
QuickGOQ96NX5
Ontology : AmiGOGolgi membrane  calmodulin-dependent protein kinase activity  calmodulin binding  ATP binding  intracellular  plasma membrane  calcium- and calmodulin-dependent protein kinase complex  peptidyl-serine phosphorylation  peptidyl-threonine phosphorylation  intracellular signal transduction  neuron projection  
Ontology : EGO-EBIGolgi membrane  calmodulin-dependent protein kinase activity  calmodulin binding  ATP binding  intracellular  plasma membrane  calcium- and calmodulin-dependent protein kinase complex  peptidyl-serine phosphorylation  peptidyl-threonine phosphorylation  intracellular signal transduction  neuron projection  
Pathways : BIOCARTA [Genes]   
NDEx NetworkCAMK1G
Atlas of Cancer Signalling NetworkCAMK1G
Wikipedia pathwaysCAMK1G
Orthology - Evolution
OrthoDB57172
GeneTree (enSembl)ENSG00000008118
Phylogenetic Trees/Animal Genes : TreeFamCAMK1G
HOVERGENQ96NX5
HOGENOMQ96NX5
Homologs : HomoloGeneCAMK1G
Homology/Alignments : Family Browser (UCSC)CAMK1G
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCAMK1G [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CAMK1G
dbVarCAMK1G
ClinVarCAMK1G
1000_GenomesCAMK1G 
Exome Variant ServerCAMK1G
ExAC (Exome Aggregation Consortium)CAMK1G (select the gene name)
Genetic variants : HAPMAP57172
Genomic Variants (DGV)CAMK1G [DGVbeta]
DECIPHERCAMK1G [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCAMK1G 
Mutations
ICGC Data PortalCAMK1G 
TCGA Data PortalCAMK1G 
Broad Tumor PortalCAMK1G
OASIS PortalCAMK1G [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCAMK1G  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCAMK1G
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CAMK1G
DgiDB (Drug Gene Interaction Database)CAMK1G
DoCM (Curated mutations)CAMK1G (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CAMK1G (select a term)
intoGenCAMK1G
Cancer3DCAMK1G(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614994   
Orphanet
MedgenCAMK1G
Genetic Testing Registry CAMK1G
NextProtQ96NX5 [Medical]
TSGene57172
GENETestsCAMK1G
Target ValidationCAMK1G
Huge Navigator CAMK1G [HugePedia]
snp3D : Map Gene to Disease57172
BioCentury BCIQCAMK1G
ClinGenCAMK1G
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57172
Chemical/Pharm GKB GenePA26049
Clinical trialCAMK1G
Miscellaneous
canSAR (ICR)CAMK1G (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCAMK1G
EVEXCAMK1G
GoPubMedCAMK1G
iHOPCAMK1G
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:26:35 CEST 2017

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