Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CAMKV (CaM kinase like vesicle associated)

Identity

Alias_namesCaM kinase-like vesicle-associated
Alias_symbol (synonym)MGC8407
VACAMKL
Other alias1G5
HGNC (Hugo) CAMKV
LocusID (NCBI) 79012
Atlas_Id 61397
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 49857981 and ends at 49870222 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CAMKV (3p21.31) / CABP1 (12q24.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CAMKV   28788
Cards
Entrez_Gene (NCBI)CAMKV  79012  CaM kinase like vesicle associated
Aliases1G5; VACAMKL
GeneCards (Weizmann)CAMKV
Ensembl hg19 (Hinxton)ENSG00000164076 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164076 [Gene_View]  chr3:49857981-49870222 [Contig_View]  CAMKV [Vega]
ICGC DataPortalENSG00000164076
TCGA cBioPortalCAMKV
AceView (NCBI)CAMKV
Genatlas (Paris)CAMKV
WikiGenes79012
SOURCE (Princeton)CAMKV
Genetics Home Reference (NIH)CAMKV
Genomic and cartography
GoldenPath hg38 (UCSC)CAMKV  -     chr3:49857981-49870222 -  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CAMKV  -     3p21.31   [Description]    (hg19-Feb_2009)
EnsemblCAMKV - 3p21.31 [CytoView hg19]  CAMKV - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBICAMKV [Mapview hg19]  CAMKV [Mapview hg38]
OMIM614993   
Gene and transcription
Genbank (Entrez)AK074856 AK074899 AK075294 AK226073 AK295588
RefSeq transcript (Entrez)NM_001320147 NM_024046
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CAMKV
Cluster EST : UnigeneHs.145156 [ NCBI ]
CGAP (NCI)Hs.145156
Alternative Splicing GalleryENSG00000164076
Gene ExpressionCAMKV [ NCBI-GEO ]   CAMKV [ EBI - ARRAY_EXPRESS ]   CAMKV [ SEEK ]   CAMKV [ MEM ]
Gene Expression Viewer (FireBrowse)CAMKV [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79012
GTEX Portal (Tissue expression)CAMKV
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NCB2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NCB2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NCB2
Splice isoforms : SwissVarQ8NCB2
PhosPhoSitePlusQ8NCB2
Domaine pattern : Prosite (Expaxy)PROTEIN_KINASE_DOM (PS50011)   
Domains : Interpro (EBI)Ca/CaM-dep_Ca-dep_prot_Kinase    Kinase-like_dom    Prot_kinase_dom   
Domain families : Pfam (Sanger)Pkinase (PF00069)   
Domain families : Pfam (NCBI)pfam00069   
Conserved Domain (NCBI)CAMKV
DMDM Disease mutations79012
Blocks (Seattle)CAMKV
SuperfamilyQ8NCB2
Human Protein AtlasENSG00000164076
Peptide AtlasQ8NCB2
HPRD11361
IPIIPI00478157   IPI00300273   IPI00304600   IPI00909172   IPI00945217   IPI00909727   IPI00946946   IPI00908355   IPI00947114   IPI00945039   
Protein Interaction databases
DIP (DOE-UCLA)Q8NCB2
IntAct (EBI)Q8NCB2
FunCoupENSG00000164076
BioGRIDCAMKV
STRING (EMBL)CAMKV
ZODIACCAMKV
Ontologies - Pathways
QuickGOQ8NCB2
Ontology : AmiGOcalmodulin-dependent protein kinase activity  calmodulin binding  ATP binding  intracellular  plasma membrane  peptidyl-serine phosphorylation  peptidyl-threonine phosphorylation  cytoplasmic vesicle membrane  intracellular signal transduction  
Ontology : EGO-EBIcalmodulin-dependent protein kinase activity  calmodulin binding  ATP binding  intracellular  plasma membrane  peptidyl-serine phosphorylation  peptidyl-threonine phosphorylation  cytoplasmic vesicle membrane  intracellular signal transduction  
NDEx NetworkCAMKV
Atlas of Cancer Signalling NetworkCAMKV
Wikipedia pathwaysCAMKV
Orthology - Evolution
OrthoDB79012
GeneTree (enSembl)ENSG00000164076
Phylogenetic Trees/Animal Genes : TreeFamCAMKV
HOVERGENQ8NCB2
HOGENOMQ8NCB2
Homologs : HomoloGeneCAMKV
Homology/Alignments : Family Browser (UCSC)CAMKV
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCAMKV [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CAMKV
dbVarCAMKV
ClinVarCAMKV
1000_GenomesCAMKV 
Exome Variant ServerCAMKV
ExAC (Exome Aggregation Consortium)CAMKV (select the gene name)
Genetic variants : HAPMAP79012
Genomic Variants (DGV)CAMKV [DGVbeta]
DECIPHERCAMKV [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCAMKV 
Mutations
ICGC Data PortalCAMKV 
TCGA Data PortalCAMKV 
Broad Tumor PortalCAMKV
OASIS PortalCAMKV [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCAMKV  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCAMKV
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CAMKV
DgiDB (Drug Gene Interaction Database)CAMKV
DoCM (Curated mutations)CAMKV (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CAMKV (select a term)
intoGenCAMKV
Cancer3DCAMKV(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614993   
Orphanet
MedgenCAMKV
Genetic Testing Registry CAMKV
NextProtQ8NCB2 [Medical]
TSGene79012
GENETestsCAMKV
Target ValidationCAMKV
Huge Navigator CAMKV [HugePedia]
snp3D : Map Gene to Disease79012
BioCentury BCIQCAMKV
ClinGenCAMKV
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79012
Chemical/Pharm GKB GenePA142672205
Clinical trialCAMKV
Miscellaneous
canSAR (ICR)CAMKV (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCAMKV
EVEXCAMKV
GoPubMedCAMKV
iHOPCAMKV
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:03:49 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.