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CAMP (cathelicidin antimicrobial peptide)

Identity

Alias_symbol (synonym)CAP18
FALL39
FALL-39
LL37
Other aliasCAP-18
CRAMP
HSD26
HGNC (Hugo) CAMP
LocusID (NCBI) 820
Atlas_Id 45737
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 48264837 and ends at 48266981 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ARIH2 (3p21.31) / CAMP (3p21.31)ZNF589 (3p21.31) / CAMP (3p21.31)ARIH2 3p21.31 / CAMP 3p21.31
ZNF589 3p21.31 / CAMP 3p21.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CAMP   1472
Cards
Entrez_Gene (NCBI)CAMP  820  cathelicidin antimicrobial peptide
AliasesCAP-18; CAP18; CRAMP; FALL-39; 
FALL39; HSD26; LL37
GeneCards (Weizmann)CAMP
Ensembl hg19 (Hinxton)ENSG00000164047 [Gene_View]  chr3:48264837-48266981 [Contig_View]  CAMP [Vega]
Ensembl hg38 (Hinxton)ENSG00000164047 [Gene_View]  chr3:48264837-48266981 [Contig_View]  CAMP [Vega]
ICGC DataPortalENSG00000164047
TCGA cBioPortalCAMP
AceView (NCBI)CAMP
Genatlas (Paris)CAMP
WikiGenes820
SOURCE (Princeton)CAMP
Genetics Home Reference (NIH)CAMP
Genomic and cartography
GoldenPath hg19 (UCSC)CAMP  -     chr3:48264837-48266981 +  3p21.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CAMP  -     3p21.31   [Description]    (hg38-Dec_2013)
EnsemblCAMP - 3p21.31 [CytoView hg19]  CAMP - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBICAMP [Mapview hg19]  CAMP [Mapview hg38]
OMIM600474   
Gene and transcription
Genbank (Entrez)AA635187 AY162210 AY251531 BC055089 BU074012
RefSeq transcript (Entrez)NM_004345
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)CAMP
Cluster EST : UnigeneHs.51120 [ NCBI ]
CGAP (NCI)Hs.51120
Alternative Splicing GalleryENSG00000164047
Gene ExpressionCAMP [ NCBI-GEO ]   CAMP [ EBI - ARRAY_EXPRESS ]   CAMP [ SEEK ]   CAMP [ MEM ]
Gene Expression Viewer (FireBrowse)CAMP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)820
GTEX Portal (Tissue expression)CAMP
Protein : pattern, domain, 3D structure
UniProt/SwissProtP49913   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP49913  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP49913
Splice isoforms : SwissVarP49913
PhosPhoSitePlusP49913
Domaine pattern : Prosite (Expaxy)CATHELICIDINS_1 (PS00946)    CATHELICIDINS_2 (PS00947)   
Domains : Interpro (EBI)Cathelicidin    Cathelicidin_CS    Cathlecidin_C   
Domain families : Pfam (Sanger)CAP18_C (PF12153)    Cathelicidins (PF00666)   
Domain families : Pfam (NCBI)pfam12153    pfam00666   
Domain structure : Prodom (Prabi Lyon)Cathelicidin (PD001838)   
Conserved Domain (NCBI)CAMP
DMDM Disease mutations820
Blocks (Seattle)CAMP
PDB (SRS)2FBS    2FBU    2FCG    2K6O    2LMF    4EYC   
PDB (PDBSum)2FBS    2FBU    2FCG    2K6O    2LMF    4EYC   
PDB (IMB)2FBS    2FBU    2FCG    2K6O    2LMF    4EYC   
PDB (RSDB)2FBS    2FBU    2FCG    2K6O    2LMF    4EYC   
Structural Biology KnowledgeBase2FBS    2FBU    2FCG    2K6O    2LMF    4EYC   
SCOP (Structural Classification of Proteins)2FBS    2FBU    2FCG    2K6O    2LMF    4EYC   
CATH (Classification of proteins structures)2FBS    2FBU    2FCG    2K6O    2LMF    4EYC   
SuperfamilyP49913
Human Protein AtlasENSG00000164047
Peptide AtlasP49913
HPRD02722
IPIIPI00292532   
Protein Interaction databases
DIP (DOE-UCLA)P49913
IntAct (EBI)P49913
FunCoupENSG00000164047
BioGRIDCAMP
STRING (EMBL)CAMP
ZODIACCAMP
Ontologies - Pathways
QuickGOP49913
Ontology : AmiGOresponse to yeast  innate immune response in mucosa  chronic inflammatory response  protein binding  extracellular region  extracellular space  cell wall  intracellular  antibacterial humoral response  antifungal humoral response  specific granule  defense response to bacterium  negative regulation of growth of symbiont on or near host surface  innate immune response  innate immune response  cell redox homeostasis  defense response to Gram-negative bacterium  defense response to Gram-positive bacterium  defense response to Gram-positive bacterium  killing by host of symbiont cells  extracellular exosome  positive regulation of interleukin-8 secretion  
Ontology : EGO-EBIresponse to yeast  innate immune response in mucosa  chronic inflammatory response  protein binding  extracellular region  extracellular space  cell wall  intracellular  antibacterial humoral response  antifungal humoral response  specific granule  defense response to bacterium  negative regulation of growth of symbiont on or near host surface  innate immune response  innate immune response  cell redox homeostasis  defense response to Gram-negative bacterium  defense response to Gram-positive bacterium  defense response to Gram-positive bacterium  killing by host of symbiont cells  extracellular exosome  positive regulation of interleukin-8 secretion  
Pathways : KEGGSalivary secretion    Tuberculosis   
NDEx NetworkCAMP
Atlas of Cancer Signalling NetworkCAMP
Wikipedia pathwaysCAMP
Orthology - Evolution
OrthoDB820
GeneTree (enSembl)ENSG00000164047
Phylogenetic Trees/Animal Genes : TreeFamCAMP
HOVERGENP49913
HOGENOMP49913
Homologs : HomoloGeneCAMP
Homology/Alignments : Family Browser (UCSC)CAMP
Gene fusions - Rearrangements
Fusion : MitelmanARIH2/CAMP [3p21.31/3p21.31]  [t(3;3)(p21;p21)]  
Fusion : MitelmanZNF589/CAMP [3p21.31/3p21.31]  [t(3;3)(p21;p21)]  
Fusion: TCGAARIH2 3p21.31 CAMP 3p21.31 GBM
Fusion: TCGAZNF589 3p21.31 CAMP 3p21.31 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCAMP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CAMP
dbVarCAMP
ClinVarCAMP
1000_GenomesCAMP 
Exome Variant ServerCAMP
ExAC (Exome Aggregation Consortium)CAMP (select the gene name)
Genetic variants : HAPMAP820
Genomic Variants (DGV)CAMP [DGVbeta]
DECIPHER (Syndromes)3:48264837-48266981  ENSG00000164047
CONAN: Copy Number AnalysisCAMP 
Mutations
ICGC Data PortalCAMP 
TCGA Data PortalCAMP 
Broad Tumor PortalCAMP
OASIS PortalCAMP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCAMP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCAMP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CAMP
DgiDB (Drug Gene Interaction Database)CAMP
DoCM (Curated mutations)CAMP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CAMP (select a term)
intoGenCAMP
Cancer3DCAMP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600474   
Orphanet
MedgenCAMP
Genetic Testing Registry CAMP
NextProtP49913 [Medical]
TSGene820
GENETestsCAMP
Huge Navigator CAMP [HugePedia]
snp3D : Map Gene to Disease820
BioCentury BCIQCAMP
ClinGenCAMP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD820
Chemical/Pharm GKB GenePA26054
Clinical trialCAMP
Miscellaneous
canSAR (ICR)CAMP (select the gene name)
Probes
Litterature
PubMed249 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCAMP
EVEXCAMP
GoPubMedCAMP
iHOPCAMP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:54:56 CEST 2017

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