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CAMTA2 (calmodulin binding transcription activator 2)

Identity

Alias_symbol (synonym)KIAA0909
Other alias-
HGNC (Hugo) CAMTA2
LocusID (NCBI) 23125
Atlas_Id 61401
Location 17p13.2  [Link to chromosome band 17p13]
Location_base_pair Starts at 4871287 and ends at 4890960 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CAMTA2 (17p13.2) / DAP (5p15.2)CAMTA2 (17p13.2) / PDE2A (11q13.4)INCA1 (17p13.2) / CAMTA2 (17p13.2)
SPAG7 (17p13.2) / CAMTA2 (17p13.2)YWHAZ (8q22.3) / CAMTA2 (17p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CAMTA2   18807
Cards
Entrez_Gene (NCBI)CAMTA2  23125  calmodulin binding transcription activator 2
Aliases
GeneCards (Weizmann)CAMTA2
Ensembl hg19 (Hinxton)ENSG00000108509 [Gene_View]  chr17:4871287-4890960 [Contig_View]  CAMTA2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000108509 [Gene_View]  chr17:4871287-4890960 [Contig_View]  CAMTA2 [Vega]
ICGC DataPortalENSG00000108509
TCGA cBioPortalCAMTA2
AceView (NCBI)CAMTA2
Genatlas (Paris)CAMTA2
WikiGenes23125
SOURCE (Princeton)CAMTA2
Genetics Home Reference (NIH)CAMTA2
Genomic and cartography
GoldenPath hg19 (UCSC)CAMTA2  -     chr17:4871287-4890960 -  17p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CAMTA2  -     17p13.2   [Description]    (hg38-Dec_2013)
EnsemblCAMTA2 - 17p13.2 [CytoView hg19]  CAMTA2 - 17p13.2 [CytoView hg38]
Mapping of homologs : NCBICAMTA2 [Mapview hg19]  CAMTA2 [Mapview hg38]
OMIM611508   
Gene and transcription
Genbank (Entrez)AB020716 AK302528 AK307947 AK308666 AL831849
RefSeq transcript (Entrez)NM_001171166 NM_001171167 NM_001171168 NM_015099
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)CAMTA2
Cluster EST : UnigeneHs.632242 [ NCBI ]
CGAP (NCI)Hs.632242
Alternative Splicing GalleryENSG00000108509
Gene ExpressionCAMTA2 [ NCBI-GEO ]   CAMTA2 [ EBI - ARRAY_EXPRESS ]   CAMTA2 [ SEEK ]   CAMTA2 [ MEM ]
Gene Expression Viewer (FireBrowse)CAMTA2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23125
GTEX Portal (Tissue expression)CAMTA2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94983   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO94983  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO94983
Splice isoforms : SwissVarO94983
PhosPhoSitePlusO94983
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    CG_1 (PS51437)    IQ (PS50096)   
Domains : Interpro (EBI)Ankyrin_rpt-contain_dom    CG-1_dom    Ig_E-set    IPT    IQ_motif_EF-hand-BS   
Domain families : Pfam (Sanger)CG-1 (PF03859)    IQ (PF00612)    TIG (PF01833)   
Domain families : Pfam (NCBI)pfam03859    pfam00612    pfam01833   
Domain families : Smart (EMBL)CG-1 (SM01076)  IQ (SM00015)  
Conserved Domain (NCBI)CAMTA2
DMDM Disease mutations23125
Blocks (Seattle)CAMTA2
SuperfamilyO94983
Human Protein AtlasENSG00000108509
Peptide AtlasO94983
HPRD13002
IPIIPI00478847   IPI00747254   IPI00744877   IPI00183704   IPI00744658   IPI00909741   IPI00954863   
Protein Interaction databases
DIP (DOE-UCLA)O94983
IntAct (EBI)O94983
FunCoupENSG00000108509
BioGRIDCAMTA2
STRING (EMBL)CAMTA2
ZODIACCAMTA2
Ontologies - Pathways
QuickGOO94983
Ontology : AmiGODNA binding  chromatin binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  transcription factor binding  cardiac muscle hypertrophy in response to stress  histone deacetylase binding  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIDNA binding  chromatin binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  transcription factor binding  cardiac muscle hypertrophy in response to stress  histone deacetylase binding  positive regulation of transcription from RNA polymerase II promoter  
NDEx NetworkCAMTA2
Atlas of Cancer Signalling NetworkCAMTA2
Wikipedia pathwaysCAMTA2
Orthology - Evolution
OrthoDB23125
GeneTree (enSembl)ENSG00000108509
Phylogenetic Trees/Animal Genes : TreeFamCAMTA2
HOVERGENO94983
HOGENOMO94983
Homologs : HomoloGeneCAMTA2
Homology/Alignments : Family Browser (UCSC)CAMTA2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCAMTA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CAMTA2
dbVarCAMTA2
ClinVarCAMTA2
1000_GenomesCAMTA2 
Exome Variant ServerCAMTA2
ExAC (Exome Aggregation Consortium)CAMTA2 (select the gene name)
Genetic variants : HAPMAP23125
Genomic Variants (DGV)CAMTA2 [DGVbeta]
DECIPHER (Syndromes)17:4871287-4890960  ENSG00000108509
CONAN: Copy Number AnalysisCAMTA2 
Mutations
ICGC Data PortalCAMTA2 
TCGA Data PortalCAMTA2 
Broad Tumor PortalCAMTA2
OASIS PortalCAMTA2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCAMTA2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCAMTA2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CAMTA2
DgiDB (Drug Gene Interaction Database)CAMTA2
DoCM (Curated mutations)CAMTA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CAMTA2 (select a term)
intoGenCAMTA2
Cancer3DCAMTA2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611508   
Orphanet
MedgenCAMTA2
Genetic Testing Registry CAMTA2
NextProtO94983 [Medical]
TSGene23125
GENETestsCAMTA2
Huge Navigator CAMTA2 [HugePedia]
snp3D : Map Gene to Disease23125
BioCentury BCIQCAMTA2
ClinGenCAMTA2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23125
Chemical/Pharm GKB GenePA38689
Clinical trialCAMTA2
Miscellaneous
canSAR (ICR)CAMTA2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCAMTA2
EVEXCAMTA2
GoPubMedCAMTA2
iHOPCAMTA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:58:03 CET 2017

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