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CANT1 (calcium activated nucleotidase 1)

Identity

Other namesDBQD
SCAN-1
SCAN1
SHAPY
HGNC (Hugo) CANT1
LocusID (NCBI) 124583
Location 17q25.3
Location_base_pair Starts at 76987798 and ends at 77005899 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

Other Solid tumors implicated (Data extracted from papers in the Atlas)

Solid Tumors AmeloblastomID5945

External links

Nomenclature
HGNC (Hugo)CANT1   19721
Cards
Entrez_Gene (NCBI)CANT1  124583  calcium activated nucleotidase 1
GeneCards (Weizmann)CANT1
Ensembl (Hinxton)ENSG00000171302 [Gene_View]  chr17:76987798-77005899 [Contig_View]  CANT1 [Vega]
ICGC DataPortalENSG00000171302
AceView (NCBI)CANT1
Genatlas (Paris)CANT1
WikiGenes124583
SOURCE (Princeton)NM_001159772 NM_001159773 NM_138793
Genomic and cartography
GoldenPath (UCSC)CANT1  -  17q25.3   chr17:76987798-77005899 -  17q25.3   [Description]    (hg19-Feb_2009)
EnsemblCANT1 - 17q25.3 [CytoView]
Mapping of homologs : NCBICANT1 [Mapview]
OMIM251450   613165   
Gene and transcription
Genbank (Entrez)AB097006 AB097033 AF328554 AJ312208 AK026161
RefSeq transcript (Entrez)NM_001159772 NM_001159773 NM_138793
RefSeq genomic (Entrez)AC_000149 NC_000017 NC_018928 NG_016645 NT_010783 NW_001838455 NW_004929407
Consensus coding sequences : CCDS (NCBI)CANT1
Cluster EST : UnigeneHs.8859 [ NCBI ]
CGAP (NCI)Hs.8859
Alternative Splicing : Fast-db (Paris)GSHG0013784
Alternative Splicing GalleryENSG00000171302
Gene ExpressionCANT1 [ NCBI-GEO ]     CANT1 [ SEEK ]   CANT1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WVQ1 (Uniprot)
NextProtQ8WVQ1  [Medical]
With graphics : InterProQ8WVQ1
Splice isoforms : SwissVarQ8WVQ1 (Swissvar)
Catalytic activity : Enzyme3.6.1.6 [ Enzyme-Expasy ]   3.6.1.63.6.1.6 [ IntEnz-EBI ]   3.6.1.6 [ BRENDA ]   3.6.1.6 [ KEGG ]   
Domains : Interpro (EBI)Apyrase   
Related proteins : CluSTrQ8WVQ1
Domain families : Pfam (Sanger)Apyrase (PF06079)   
Domain families : Pfam (NCBI)pfam06079   
DMDM Disease mutations124583
Blocks (Seattle)Q8WVQ1
PDB (SRS)1S18    1S1D    2H2N    2H2U   
PDB (PDBSum)1S18    1S1D    2H2N    2H2U   
PDB (IMB)1S18    1S1D    2H2N    2H2U   
PDB (RSDB)1S18    1S1D    2H2N    2H2U   
Human Protein AtlasENSG00000171302
Peptide AtlasQ8WVQ1
HPRD13003
IPIIPI00103175   IPI00413533   IPI00909245   IPI01018673   
Protein Interaction databases
DIP (DOE-UCLA)Q8WVQ1
IntAct (EBI)Q8WVQ1
FunCoupENSG00000171302
BioGRIDCANT1
InParanoidQ8WVQ1
Interologous Interaction database Q8WVQ1
IntegromeDBCANT1
STRING (EMBL)CANT1
Ontologies - Pathways
Ontology : AmiGOsignal transducer activity  calcium ion binding  endoplasmic reticulum membrane  signal transduction  integral component of membrane  proteoglycan biosynthetic process  Golgi cisterna membrane  positive regulation of I-kappaB kinase/NF-kappaB signaling  uridine-diphosphatase activity  extracellular vesicular exosome  
Ontology : EGO-EBIsignal transducer activity  calcium ion binding  endoplasmic reticulum membrane  signal transduction  integral component of membrane  proteoglycan biosynthetic process  Golgi cisterna membrane  positive regulation of I-kappaB kinase/NF-kappaB signaling  uridine-diphosphatase activity  extracellular vesicular exosome  
Pathways : KEGGPurine metabolism    Pyrimidine metabolism   
Protein Interaction DatabaseCANT1
Wikipedia pathwaysCANT1
Gene fusion - rearrangments
Rearrangement : COSMICCANT1 [17q25.3]  -  ETV4 [17q21.31]
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CANT1
SNP (GeneSNP Utah)CANT1
SNP : HGBaseCANT1
Genetic variants : HAPMAPCANT1
1000_GenomesCANT1 
ICGC programENSG00000171302 
Cancer Gene: CensusCANT1 
CONAN: Copy Number AnalysisCANT1 
Somatic Mutations in Cancer : COSMICCANT1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
Mutations and Diseases : HGMDCANT1
OMIM251450    613165   
MedgenCANT1
GENETestsCANT1
Disease Genetic AssociationCANT1
Huge Navigator CANT1 [HugePedia]  CANT1 [HugeCancerGEM]
Genomic VariantsCANT1  CANT1 [DGVbeta]
Exome VariantCANT1
dbVarCANT1
ClinVarCANT1
snp3D : Map Gene to Disease124583
General knowledge
Homologs : HomoloGeneCANT1
Homology/Alignments : Family Browser (UCSC)CANT1
Phylogenetic Trees/Animal Genes : TreeFamCANT1
Chemical/Protein Interactions : CTD124583
Chemical/Pharm GKB GenePA134984439
Clinical trialCANT1
Cancer Resource (Charite)ENSG00000171302
Other databases
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
CoreMineCANT1
iHOPCANT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 13 12:36:15 CEST 2014

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