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CANT1 (calcium activated nucleotidase 1)

Identity

Other namesDBQD
DBQD1
SCAN-1
SCAN1
SHAPY
HGNC (Hugo) CANT1
LocusID (NCBI) 124583
Atlas_Id 52312
Location 17q25.3
Location_base_pair Starts at 76987798 and ends at 77005899 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CANT1 (17q25.3) / CANT1 (17q25.3)CANT1 (17q25.3) / ETV1 (7p21.2)CANT1 (17q25.3) / ETV4 (17q21.31)
CANT1 (17q25.3) / FBXL20 (17q12)CANT1 (17q25.3) / PPP3CA (4q24)CANT1 (17q25.3) / PSMD3 (17q21.1)
ETV4 (17q21.31) / CANT1 (17q25.3)HNRNPA2B1 (7p15.2) / CANT1 (17q25.3)CANT1 17q25.3 / ETV4 17q21.31
CANT1 17q25.3 / FBXL20 17q12CANT1 17q25.3 / PPP3CA 4q24CANT1 17q25.3 / PSMD3 17q21.1
HNRNPA2B1 7p15.2 / CANT1 17q25.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 0 ]
  Prostate tumors: an overview

External links

Nomenclature
HGNC (Hugo)CANT1   19721
Cards
Entrez_Gene (NCBI)CANT1  124583  calcium activated nucleotidase 1
GeneCards (Weizmann)CANT1
Ensembl hg19 (Hinxton)ENSG00000171302 [Gene_View]  chr17:76987798-77005899 [Contig_View]  CANT1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000171302 [Gene_View]  chr17:76987798-77005899 [Contig_View]  CANT1 [Vega]
ICGC DataPortalENSG00000171302
TCGA cBioPortalCANT1
AceView (NCBI)CANT1
Genatlas (Paris)CANT1
WikiGenes124583
SOURCE (Princeton)CANT1
Genomic and cartography
GoldenPath hg19 (UCSC)CANT1  -     chr17:76987798-77005899 -  17q25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CANT1  -     17q25.3   [Description]    (hg38-Dec_2013)
EnsemblCANT1 - 17q25.3 [CytoView hg19]  CANT1 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBICANT1 [Mapview hg19]  CANT1 [Mapview hg38]
OMIM251450   613165   
Gene and transcription
Genbank (Entrez)AB097006 AB097033 AF328554 AJ312208 AK026161
RefSeq transcript (Entrez)NM_001159772 NM_001159773 NM_138793
RefSeq genomic (Entrez)NC_000017 NC_018928 NG_016645 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)CANT1
Cluster EST : UnigeneHs.8859 [ NCBI ]
CGAP (NCI)Hs.8859
Alternative Splicing : Fast-db (Paris)GSHG0013784
Alternative Splicing GalleryENSG00000171302
Gene ExpressionCANT1 [ NCBI-GEO ]   CANT1 [ EBI - ARRAY_EXPRESS ]   CANT1 [ SEEK ]   CANT1 [ MEM ]
Gene Expression Viewer (FireBrowse)CANT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)124583
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WVQ1 (Uniprot)
NextProtQ8WVQ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WVQ1
Splice isoforms : SwissVarQ8WVQ1 (Swissvar)
Catalytic activity : Enzyme3.6.1.6 [ Enzyme-Expasy ]   3.6.1.63.6.1.6 [ IntEnz-EBI ]   3.6.1.6 [ BRENDA ]   3.6.1.6 [ KEGG ]   
PhosPhoSitePlusQ8WVQ1
Domains : Interpro (EBI)Apyrase   
Domain families : Pfam (Sanger)Apyrase (PF06079)   
Domain families : Pfam (NCBI)pfam06079   
DMDM Disease mutations124583
Blocks (Seattle)CANT1
PDB (SRS)1S18    1S1D    2H2N    2H2U   
PDB (PDBSum)1S18    1S1D    2H2N    2H2U   
PDB (IMB)1S18    1S1D    2H2N    2H2U   
PDB (RSDB)1S18    1S1D    2H2N    2H2U   
Structural Biology KnowledgeBase1S18    1S1D    2H2N    2H2U   
SCOP (Structural Classification of Proteins)1S18    1S1D    2H2N    2H2U   
CATH (Classification of proteins structures)1S18    1S1D    2H2N    2H2U   
SuperfamilyQ8WVQ1
Human Protein AtlasENSG00000171302
Peptide AtlasQ8WVQ1
HPRD13003
IPIIPI00103175   IPI00413533   IPI00909245   IPI01018673   
Protein Interaction databases
DIP (DOE-UCLA)Q8WVQ1
IntAct (EBI)Q8WVQ1
FunCoupENSG00000171302
BioGRIDCANT1
STRING (EMBL)CANT1
ZODIACCANT1
Ontologies - Pathways
QuickGOQ8WVQ1
Ontology : AmiGOguanosine-diphosphatase activity  signal transducer activity  calcium ion binding  endoplasmic reticulum membrane  signal transduction  integral component of membrane  proteoglycan biosynthetic process  Golgi cisterna membrane  positive regulation of I-kappaB kinase/NF-kappaB signaling  uridine-diphosphatase activity  extracellular exosome  
Ontology : EGO-EBIguanosine-diphosphatase activity  signal transducer activity  calcium ion binding  endoplasmic reticulum membrane  signal transduction  integral component of membrane  proteoglycan biosynthetic process  Golgi cisterna membrane  positive regulation of I-kappaB kinase/NF-kappaB signaling  uridine-diphosphatase activity  extracellular exosome  
Pathways : KEGGPurine metabolism    Pyrimidine metabolism   
NDEx Network
Atlas of Cancer Signalling NetworkCANT1
Wikipedia pathwaysCANT1
Orthology - Evolution
OrthoDB124583
GeneTree (enSembl)ENSG00000171302
Phylogenetic Trees/Animal Genes : TreeFamCANT1
Homologs : HomoloGeneCANT1
Homology/Alignments : Family Browser (UCSC)CANT1
Gene fusions - Rearrangements
Fusion: TCGACANT1 17q25.3 FBXL20 17q12 BRCA
Fusion: TCGACANT1 17q25.3 PPP3CA 4q24 PRAD
Fusion: TCGACANT1 17q25.3 PSMD3 17q21.1 BRCA
Fusion: TCGAHNRNPA2B1 7p15.2 CANT1 17q25.3 PRAD
Polymorphisms : SNP, variants
NCBI Variation ViewerCANT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CANT1
dbVarCANT1
ClinVarCANT1
1000_GenomesCANT1 
Exome Variant ServerCANT1
ExAC (Exome Aggregation Consortium)CANT1 (select the gene name)
SNP (GeneSNP Utah)CANT1
SNP : HGBaseCANT1
Genetic variants : HAPMAPCANT1
Genomic Variants (DGV)CANT1 [DGVbeta]
Mutations
ICGC Data PortalCANT1 
TCGA Data PortalCANT1 
Broad Tumor PortalCANT1
OASIS PortalCANT1 [ Somatic mutations - Copy number]
Cancer Gene: CensusCANT1 
Somatic Mutations in Cancer : COSMICCANT1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
BioMutasearch CANT1
DgiDB (Drug Gene Interaction Database)CANT1
DoCM (Curated mutations)CANT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CANT1 (select a term)
intoGenCANT1
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)17:76987798-77005899
CONAN: Copy Number AnalysisCANT1 
Mutations and Diseases : HGMDCANT1
OMIM251450    613165   
MedgenCANT1
Genetic Testing Registry CANT1
NextProtQ8WVQ1 [Medical]
TSGene124583
GENETestsCANT1
Huge Navigator CANT1 [HugePedia]  CANT1 [HugeCancerGEM]
snp3D : Map Gene to Disease124583
BioCentury BCIQCANT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD124583
Chemical/Pharm GKB GenePA134984439
Clinical trialCANT1
Miscellaneous
canSAR (ICR)CANT1 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCANT1
GoPubMedCANT1
iHOPCANT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Sat Apr 16 17:38:29 CEST 2016

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