Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CAPN13 (calpain 13)

Identity

Alias_symbol (synonym)FLJ23523
Other alias-
HGNC (Hugo) CAPN13
LocusID (NCBI) 92291
Atlas_Id 61407
Location 2p23.1  [Link to chromosome band 2p23]
Location_base_pair Starts at 30722771 and ends at 30807445 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CAPN13 (2p23.1) / CAPN13 (2p23.1)CAPN13 (2p23.1) / FKBP11 (12q13.12)CAPN13 (2p23.1) / GALNT14 (2p23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CAPN13   16663
Cards
Entrez_Gene (NCBI)CAPN13  92291  calpain 13
Aliases
GeneCards (Weizmann)CAPN13
Ensembl hg19 (Hinxton)ENSG00000162949 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162949 [Gene_View]  chr2:30722771-30807445 [Contig_View]  CAPN13 [Vega]
ICGC DataPortalENSG00000162949
TCGA cBioPortalCAPN13
AceView (NCBI)CAPN13
Genatlas (Paris)CAPN13
WikiGenes92291
SOURCE (Princeton)CAPN13
Genetics Home Reference (NIH)CAPN13
Genomic and cartography
GoldenPath hg38 (UCSC)CAPN13  -     chr2:30722771-30807445 -  2p23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CAPN13  -     2p23.1   [Description]    (hg19-Feb_2009)
EnsemblCAPN13 - 2p23.1 [CytoView hg19]  CAPN13 - 2p23.1 [CytoView hg38]
Mapping of homologs : NCBICAPN13 [Mapview hg19]  CAPN13 [Mapview hg38]
OMIM610228   
Gene and transcription
Genbank (Entrez)AK026692 AK027176 AK074418 AK290298 AK308037
RefSeq transcript (Entrez)NM_144575
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CAPN13
Cluster EST : UnigeneHs.660911 [ NCBI ]
CGAP (NCI)Hs.660911
Alternative Splicing GalleryENSG00000162949
Gene ExpressionCAPN13 [ NCBI-GEO ]   CAPN13 [ EBI - ARRAY_EXPRESS ]   CAPN13 [ SEEK ]   CAPN13 [ MEM ]
Gene Expression Viewer (FireBrowse)CAPN13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92291
GTEX Portal (Tissue expression)CAPN13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6MZZ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6MZZ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6MZZ7
Splice isoforms : SwissVarQ6MZZ7
Catalytic activity : Enzyme3.4.22.- [ Enzyme-Expasy ]   3.4.22.-3.4.22.- [ IntEnz-EBI ]   3.4.22.- [ BRENDA ]   3.4.22.- [ KEGG ]   
PhosPhoSitePlusQ6MZZ7
Domaine pattern : Prosite (Expaxy)CALPAIN_CAT (PS50203)   
Domains : Interpro (EBI)Calpain_cysteine_protease    Calpain_domain_III    CANP13/Calpain-C    EF-hand-dom_pair    Peptidase_C2_calpain_cat   
Domain families : Pfam (Sanger)Calpain_III (PF01067)    Peptidase_C2 (PF00648)   
Domain families : Pfam (NCBI)pfam01067    pfam00648   
Domain families : Smart (EMBL)CysPc (SM00230)  
Conserved Domain (NCBI)CAPN13
DMDM Disease mutations92291
Blocks (Seattle)CAPN13
PDB (SRS)2I7A   
PDB (PDBSum)2I7A   
PDB (IMB)2I7A   
PDB (RSDB)2I7A   
Structural Biology KnowledgeBase2I7A   
SCOP (Structural Classification of Proteins)2I7A   
CATH (Classification of proteins structures)2I7A   
SuperfamilyQ6MZZ7
Human Protein AtlasENSG00000162949
Peptide AtlasQ6MZZ7
HPRD07008
IPIIPI00418334   IPI00479445   IPI01010127   IPI00893401   IPI01012050   
Protein Interaction databases
DIP (DOE-UCLA)Q6MZZ7
IntAct (EBI)Q6MZZ7
FunCoupENSG00000162949
BioGRIDCAPN13
STRING (EMBL)CAPN13
ZODIACCAPN13
Ontologies - Pathways
QuickGOQ6MZZ7
Ontology : AmiGOcalcium-dependent cysteine-type endopeptidase activity  calcium ion binding  cytoplasm  proteolysis  
Ontology : EGO-EBIcalcium-dependent cysteine-type endopeptidase activity  calcium ion binding  cytoplasm  proteolysis  
NDEx NetworkCAPN13
Atlas of Cancer Signalling NetworkCAPN13
Wikipedia pathwaysCAPN13
Orthology - Evolution
OrthoDB92291
GeneTree (enSembl)ENSG00000162949
Phylogenetic Trees/Animal Genes : TreeFamCAPN13
HOVERGENQ6MZZ7
HOGENOMQ6MZZ7
Homologs : HomoloGeneCAPN13
Homology/Alignments : Family Browser (UCSC)CAPN13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCAPN13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CAPN13
dbVarCAPN13
ClinVarCAPN13
1000_GenomesCAPN13 
Exome Variant ServerCAPN13
ExAC (Exome Aggregation Consortium)CAPN13 (select the gene name)
Genetic variants : HAPMAP92291
Genomic Variants (DGV)CAPN13 [DGVbeta]
DECIPHERCAPN13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCAPN13 
Mutations
ICGC Data PortalCAPN13 
TCGA Data PortalCAPN13 
Broad Tumor PortalCAPN13
OASIS PortalCAPN13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCAPN13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCAPN13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CAPN13
DgiDB (Drug Gene Interaction Database)CAPN13
DoCM (Curated mutations)CAPN13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CAPN13 (select a term)
intoGenCAPN13
Cancer3DCAPN13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610228   
Orphanet
MedgenCAPN13
Genetic Testing Registry CAPN13
NextProtQ6MZZ7 [Medical]
TSGene92291
GENETestsCAPN13
Huge Navigator CAPN13 [HugePedia]
snp3D : Map Gene to Disease92291
BioCentury BCIQCAPN13
ClinGenCAPN13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92291
Chemical/Pharm GKB GenePA134931170
Clinical trialCAPN13
Miscellaneous
canSAR (ICR)CAPN13 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCAPN13
EVEXCAPN13
GoPubMedCAPN13
iHOPCAPN13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:04:18 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.