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CAPN15 (calpain 15)

Identity

Alias_namesSOLH
small optic lobes (Drosophila) homolog
small optic lobes homolog (Drosophila)
Other alias
HGNC (Hugo) CAPN15
LocusID (NCBI) 6650
Atlas_Id 61409
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 577856 and ends at 604636 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CAPN15 (16p13.3) / WHSC1L1 (8p11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CAPN15   11182
Cards
Entrez_Gene (NCBI)CAPN15  6650  calpain 15
AliasesSOLH
GeneCards (Weizmann)CAPN15
Ensembl hg19 (Hinxton)ENSG00000103326 [Gene_View]  chr16:577856-604636 [Contig_View]  CAPN15 [Vega]
Ensembl hg38 (Hinxton)ENSG00000103326 [Gene_View]  chr16:577856-604636 [Contig_View]  CAPN15 [Vega]
ICGC DataPortalENSG00000103326
TCGA cBioPortalCAPN15
AceView (NCBI)CAPN15
Genatlas (Paris)CAPN15
WikiGenes6650
SOURCE (Princeton)CAPN15
Genetics Home Reference (NIH)CAPN15
Genomic and cartography
GoldenPath hg19 (UCSC)CAPN15  -     chr16:577856-604636 +  16p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CAPN15  -     16p13.3   [Description]    (hg38-Dec_2013)
EnsemblCAPN15 - 16p13.3 [CytoView hg19]  CAPN15 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBICAPN15 [Mapview hg19]  CAPN15 [Mapview hg38]
OMIM603267   
Gene and transcription
Genbank (Entrez)BC001869 BC011939 BC021854 BC032648 BC040169
RefSeq transcript (Entrez)NM_005632
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010393 NW_004929400
Consensus coding sequences : CCDS (NCBI)CAPN15
Cluster EST : UnigeneHs.632219 [ NCBI ]
CGAP (NCI)Hs.632219
Alternative Splicing GalleryENSG00000103326
Gene ExpressionCAPN15 [ NCBI-GEO ]   CAPN15 [ EBI - ARRAY_EXPRESS ]   CAPN15 [ SEEK ]   CAPN15 [ MEM ]
Gene Expression Viewer (FireBrowse)CAPN15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6650
GTEX Portal (Tissue expression)CAPN15
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75808   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75808  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75808
Splice isoforms : SwissVarO75808
Catalytic activity : Enzyme3.4.22.- [ Enzyme-Expasy ]   3.4.22.-3.4.22.- [ IntEnz-EBI ]   3.4.22.- [ BRENDA ]   3.4.22.- [ KEGG ]   
PhosPhoSitePlusO75808
Domaine pattern : Prosite (Expaxy)CALPAIN_CAT (PS50203)    THIOL_PROTEASE_CYS (PS00139)    ZF_RANBP2_1 (PS01358)    ZF_RANBP2_2 (PS50199)   
Domains : Interpro (EBI)Calpain_cysteine_protease    Pept_cys_AS    Peptidase_C2_calpain_cat    Znf_RanBP2   
Domain families : Pfam (Sanger)Peptidase_C2 (PF00648)    zf-RanBP (PF00641)   
Domain families : Pfam (NCBI)pfam00648    pfam00641   
Domain families : Smart (EMBL)CysPc (SM00230)  ZnF_RBZ (SM00547)  
Conserved Domain (NCBI)CAPN15
DMDM Disease mutations6650
Blocks (Seattle)CAPN15
SuperfamilyO75808
Human Protein AtlasENSG00000103326
Peptide AtlasO75808
HPRD07220
IPIIPI00024190   IPI00828058   IPI00952796   
Protein Interaction databases
DIP (DOE-UCLA)O75808
IntAct (EBI)O75808
FunCoupENSG00000103326
BioGRIDCAPN15
STRING (EMBL)CAPN15
ZODIACCAPN15
Ontologies - Pathways
QuickGOO75808
Ontology : AmiGOsequence-specific DNA binding transcription factor activity  calcium-dependent cysteine-type endopeptidase activity  cytoplasm  regulation of transcription, DNA-templated  proteolysis  peptidase activity  cysteine-type peptidase activity  zinc ion binding  
Ontology : EGO-EBIsequence-specific DNA binding transcription factor activity  calcium-dependent cysteine-type endopeptidase activity  cytoplasm  regulation of transcription, DNA-templated  proteolysis  peptidase activity  cysteine-type peptidase activity  zinc ion binding  
NDEx NetworkCAPN15
Atlas of Cancer Signalling NetworkCAPN15
Wikipedia pathwaysCAPN15
Orthology - Evolution
OrthoDB6650
GeneTree (enSembl)ENSG00000103326
Phylogenetic Trees/Animal Genes : TreeFamCAPN15
HOVERGENO75808
HOGENOMO75808
Homologs : HomoloGeneCAPN15
Homology/Alignments : Family Browser (UCSC)CAPN15
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCAPN15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CAPN15
dbVarCAPN15
ClinVarCAPN15
1000_GenomesCAPN15 
Exome Variant ServerCAPN15
ExAC (Exome Aggregation Consortium)CAPN15 (select the gene name)
Genetic variants : HAPMAP6650
Genomic Variants (DGV)CAPN15 [DGVbeta]
DECIPHER (Syndromes)16:577856-604636  ENSG00000103326
CONAN: Copy Number AnalysisCAPN15 
Mutations
ICGC Data PortalCAPN15 
TCGA Data PortalCAPN15 
Broad Tumor PortalCAPN15
OASIS PortalCAPN15 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCAPN15
BioMutasearch CAPN15
DgiDB (Drug Gene Interaction Database)CAPN15
DoCM (Curated mutations)CAPN15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CAPN15 (select a term)
intoGenCAPN15
Cancer3DCAPN15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603267   
Orphanet
MedgenCAPN15
Genetic Testing Registry CAPN15
NextProtO75808 [Medical]
TSGene6650
GENETestsCAPN15
Huge Navigator CAPN15 [HugePedia]
snp3D : Map Gene to Disease6650
BioCentury BCIQCAPN15
ClinGenCAPN15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6650
Chemical/Pharm GKB GenePA36019
Clinical trialCAPN15
Miscellaneous
canSAR (ICR)CAPN15 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCAPN15
EVEXCAPN15
GoPubMedCAPN15
iHOPCAPN15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:58:04 CET 2017

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