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CAPNS2 (calpain small subunit 2)

Identity

Alias_symbol (synonym)MGC12536
MGC14804
Other aliasCSS2
HGNC (Hugo) CAPNS2
LocusID (NCBI) 84290
Atlas_Id 61412
Location 16q12.2  [Link to chromosome band 16q12]
Location_base_pair Starts at 55566672 and ends at 55567684 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CAPNS2   16371
Cards
Entrez_Gene (NCBI)CAPNS2  84290  calpain small subunit 2
AliasesCSS2
GeneCards (Weizmann)CAPNS2
Ensembl hg19 (Hinxton)ENSG00000256812 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000256812 [Gene_View]  chr16:55566672-55567684 [Contig_View]  CAPNS2 [Vega]
ICGC DataPortalENSG00000256812
TCGA cBioPortalCAPNS2
AceView (NCBI)CAPNS2
Genatlas (Paris)CAPNS2
WikiGenes84290
SOURCE (Princeton)CAPNS2
Genetics Home Reference (NIH)CAPNS2
Genomic and cartography
GoldenPath hg38 (UCSC)CAPNS2  -     chr16:55566672-55567684 +  16q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CAPNS2  -     16q12.2   [Description]    (hg19-Feb_2009)
EnsemblCAPNS2 - 16q12.2 [CytoView hg19]  CAPNS2 - 16q12.2 [CytoView hg38]
Mapping of homologs : NCBICAPNS2 [Mapview hg19]  CAPNS2 [Mapview hg38]
OMIM616767   
Gene and transcription
Genbank (Entrez)AY052551 BC005397 BC006000 EU832656 HQ448149
RefSeq transcript (Entrez)NM_032330
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CAPNS2
Cluster EST : UnigeneHs.660027 [ NCBI ]
CGAP (NCI)Hs.660027
Alternative Splicing GalleryENSG00000256812
Gene ExpressionCAPNS2 [ NCBI-GEO ]   CAPNS2 [ EBI - ARRAY_EXPRESS ]   CAPNS2 [ SEEK ]   CAPNS2 [ MEM ]
Gene Expression Viewer (FireBrowse)CAPNS2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84290
GTEX Portal (Tissue expression)CAPNS2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96L46   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96L46  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96L46
Splice isoforms : SwissVarQ96L46
PhosPhoSitePlusQ96L46
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_hand_dom   
Domain families : Pfam (Sanger)EF-hand_8 (PF13833)   
Domain families : Pfam (NCBI)pfam13833   
Conserved Domain (NCBI)CAPNS2
DMDM Disease mutations84290
Blocks (Seattle)CAPNS2
SuperfamilyQ96L46
Human Protein AtlasENSG00000256812
Peptide AtlasQ96L46
HPRD16682
IPIIPI00306986   
Protein Interaction databases
DIP (DOE-UCLA)Q96L46
IntAct (EBI)Q96L46
FunCoupENSG00000256812
BioGRIDCAPNS2
STRING (EMBL)CAPNS2
ZODIACCAPNS2
Ontologies - Pathways
QuickGOQ96L46
Ontology : AmiGOcalcium ion binding  cytosol  plasma membrane  extracellular matrix disassembly  
Ontology : EGO-EBIcalcium ion binding  cytosol  plasma membrane  extracellular matrix disassembly  
Pathways : BIOCARTAmCalpain and friends in Cell motility [Genes]    Deregulation of CDK5 in Alzheimers Disease [Genes]    uCalpain and friends in Cell spread [Genes]    Integrin Signaling Pathway [Genes]    Role of MEF2D in T-cell Apoptosis [Genes]   
NDEx NetworkCAPNS2
Atlas of Cancer Signalling NetworkCAPNS2
Wikipedia pathwaysCAPNS2
Orthology - Evolution
OrthoDB84290
GeneTree (enSembl)ENSG00000256812
Phylogenetic Trees/Animal Genes : TreeFamCAPNS2
HOVERGENQ96L46
HOGENOMQ96L46
Homologs : HomoloGeneCAPNS2
Homology/Alignments : Family Browser (UCSC)CAPNS2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCAPNS2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CAPNS2
dbVarCAPNS2
ClinVarCAPNS2
1000_GenomesCAPNS2 
Exome Variant ServerCAPNS2
ExAC (Exome Aggregation Consortium)CAPNS2 (select the gene name)
Genetic variants : HAPMAP84290
Genomic Variants (DGV)CAPNS2 [DGVbeta]
DECIPHERCAPNS2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCAPNS2 
Mutations
ICGC Data PortalCAPNS2 
TCGA Data PortalCAPNS2 
Broad Tumor PortalCAPNS2
OASIS PortalCAPNS2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCAPNS2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCAPNS2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CAPNS2
DgiDB (Drug Gene Interaction Database)CAPNS2
DoCM (Curated mutations)CAPNS2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CAPNS2 (select a term)
intoGenCAPNS2
Cancer3DCAPNS2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616767   
Orphanet
MedgenCAPNS2
Genetic Testing Registry CAPNS2
NextProtQ96L46 [Medical]
TSGene84290
GENETestsCAPNS2
Target ValidationCAPNS2
Huge Navigator CAPNS2 [HugePedia]
snp3D : Map Gene to Disease84290
BioCentury BCIQCAPNS2
ClinGenCAPNS2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84290
Chemical/Pharm GKB GenePA134873146
Clinical trialCAPNS2
Miscellaneous
canSAR (ICR)CAPNS2 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCAPNS2
EVEXCAPNS2
GoPubMedCAPNS2
iHOPCAPNS2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:51 CEST 2017

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