Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CAPRIN2 (caprin family member 2)

Identity

Alias (NCBI)C1QDC1
EEG-1
EEG1
RNG140
HGNC (Hugo) CAPRIN2
HGNC Alias symbEEG1
FLJ22569
FLJ11391
caprin-2
RNG140
HGNC Previous nameC1QDC1
HGNC Previous nameC1q domain containing 1
LocusID (NCBI) 65981
Atlas_Id 61413
Location 12p11.21  [Link to chromosome band 12p11]
Location_base_pair Starts at 30709552 and ends at 30754514 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AZGP1 (7q22.1) / CAPRIN2 (12p11.21)CAPRIN2 (12p11.21) / AMN1 (12p11.21)LOC400955 () / CAPRIN2 (12p11.21)
R3HDM2 (12q13.3) / CAPRIN2 (12p11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  CAPRIN2/AMN1 (12p11)
t(12;12)(p11;q13) R3HDM2/CAPRIN2

External links

Nomenclature
HGNC (Hugo)CAPRIN2   21259
Cards
Entrez_Gene (NCBI)CAPRIN2    caprin family member 2
AliasesC1QDC1; EEG-1; EEG1; RNG140
GeneCards (Weizmann)CAPRIN2
Ensembl hg19 (Hinxton)ENSG00000110888 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000110888 [Gene_View]  ENSG00000110888 [Sequence]  chr12:30709552-30754514 [Contig_View]  CAPRIN2 [Vega]
ICGC DataPortalENSG00000110888
TCGA cBioPortalCAPRIN2
AceView (NCBI)CAPRIN2
Genatlas (Paris)CAPRIN2
SOURCE (Princeton)CAPRIN2
Genetics Home Reference (NIH)CAPRIN2
Genomic and cartography
GoldenPath hg38 (UCSC)CAPRIN2  -     chr12:30709552-30754514 -  12p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CAPRIN2  -     12p11.21   [Description]    (hg19-Feb_2009)
GoldenPathCAPRIN2 - 12p11.21 [CytoView hg19]  CAPRIN2 - 12p11.21 [CytoView hg38]
ImmunoBaseENSG00000110888
genome Data Viewer NCBICAPRIN2 [Mapview hg19]  
OMIM610375   
Gene and transcription
Genbank (Entrez)AB058776 AF326778 AF525416 AK021453 AK024247
RefSeq transcript (Entrez)NM_001002259 NM_001206856 NM_001319842 NM_001319843 NM_001319844 NM_001319845 NM_001319846 NM_023925 NM_032156
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CAPRIN2
Alternative Splicing GalleryENSG00000110888
Gene ExpressionCAPRIN2 [ NCBI-GEO ]   CAPRIN2 [ EBI - ARRAY_EXPRESS ]   CAPRIN2 [ SEEK ]   CAPRIN2 [ MEM ]
Gene Expression Viewer (FireBrowse)CAPRIN2 [ Firebrowse - Broad ]
GenevisibleExpression of CAPRIN2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)65981
GTEX Portal (Tissue expression)CAPRIN2
Human Protein AtlasENSG00000110888-CAPRIN2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IMN6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IMN6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IMN6
Splice isoforms : SwissVarQ6IMN6
PhosPhoSitePlusQ6IMN6
Domaine pattern : Prosite (Expaxy)C1Q (PS50871)   
Domains : Interpro (EBI)C1q_dom    Caprin    Caprin-1_C    Caprin-1_dimer    Tumour_necrosis_fac-like_dom   
Domain families : Pfam (Sanger)C1q (PF00386)    Caprin-1_C (PF12287)    Caprin-1_dimer (PF18293)   
Domain families : Pfam (NCBI)pfam00386    pfam12287    pfam18293   
Domain families : Smart (EMBL)C1Q (SM00110)  
Conserved Domain (NCBI)CAPRIN2
Blocks (Seattle)CAPRIN2
PDB (RSDB)4OUL    4OUM    5J97   
PDB Europe4OUL    4OUM    5J97   
PDB (PDBSum)4OUL    4OUM    5J97   
PDB (IMB)4OUL    4OUM    5J97   
Structural Biology KnowledgeBase4OUL    4OUM    5J97   
SCOP (Structural Classification of Proteins)4OUL    4OUM    5J97   
CATH (Classification of proteins structures)4OUL    4OUM    5J97   
SuperfamilyQ6IMN6
Human Protein Atlas [tissue]ENSG00000110888-CAPRIN2 [tissue]
Peptide AtlasQ6IMN6
HPRD12711
IPIIPI00855955   IPI00855878   IPI00855852   IPI00855828   IPI00791775   IPI00855991   IPI00154829   IPI01013130   IPI00385020   IPI01015834   IPI00744077   IPI01014935   IPI01013615   IPI01014065   IPI01012691   IPI01013153   
Protein Interaction databases
DIP (DOE-UCLA)Q6IMN6
IntAct (EBI)Q6IMN6
BioGRIDCAPRIN2
STRING (EMBL)CAPRIN2
ZODIACCAPRIN2
Ontologies - Pathways
QuickGOQ6IMN6
Ontology : AmiGORNA binding  signaling receptor binding  protein binding  nucleoplasm  cytoplasm  mitochondrion  centrosome  cytosol  plasma membrane  negative regulation of translation  negative regulation of cell growth  positive regulation of protein binding  positive regulation of peptidyl-serine phosphorylation  receptor complex  positive regulation of transcription by RNA polymerase II  metal ion binding  positive regulation of dendrite morphogenesis  positive regulation of dendritic spine morphogenesis  positive regulation of canonical Wnt signaling pathway  
Ontology : EGO-EBIRNA binding  signaling receptor binding  protein binding  nucleoplasm  cytoplasm  mitochondrion  centrosome  cytosol  plasma membrane  negative regulation of translation  negative regulation of cell growth  positive regulation of protein binding  positive regulation of peptidyl-serine phosphorylation  receptor complex  positive regulation of transcription by RNA polymerase II  metal ion binding  positive regulation of dendrite morphogenesis  positive regulation of dendritic spine morphogenesis  positive regulation of canonical Wnt signaling pathway  
NDEx NetworkCAPRIN2
Atlas of Cancer Signalling NetworkCAPRIN2
Wikipedia pathwaysCAPRIN2
Orthology - Evolution
OrthoDB65981
GeneTree (enSembl)ENSG00000110888
Phylogenetic Trees/Animal Genes : TreeFamCAPRIN2
HOGENOMQ6IMN6
Homologs : HomoloGeneCAPRIN2
Homology/Alignments : Family Browser (UCSC)CAPRIN2
Gene fusions - Rearrangements
Fusion : QuiverCAPRIN2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCAPRIN2 [hg38]
dbVarCAPRIN2
ClinVarCAPRIN2
MonarchCAPRIN2
1000_GenomesCAPRIN2 
Exome Variant ServerCAPRIN2
GNOMAD BrowserENSG00000110888
Varsome BrowserCAPRIN2
Genomic Variants (DGV)CAPRIN2 [DGVbeta]
DECIPHERCAPRIN2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCAPRIN2 
Mutations
ICGC Data PortalCAPRIN2 
TCGA Data PortalCAPRIN2 
Broad Tumor PortalCAPRIN2
OASIS PortalCAPRIN2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCAPRIN2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCAPRIN2
Mutations and Diseases : HGMDCAPRIN2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CAPRIN2
DgiDB (Drug Gene Interaction Database)CAPRIN2
DoCM (Curated mutations)CAPRIN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CAPRIN2 (select a term)
intoGenCAPRIN2
Cancer3DCAPRIN2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610375   
Orphanet
DisGeNETCAPRIN2
MedgenCAPRIN2
Genetic Testing Registry CAPRIN2
NextProtQ6IMN6 [Medical]
GENETestsCAPRIN2
Target ValidationCAPRIN2
Huge Navigator CAPRIN2 [HugePedia]
ClinGenCAPRIN2
Clinical trials, drugs, therapy
MyCancerGenomeCAPRIN2
Protein Interactions : CTD
Pharm GKB GenePA162381044
Clinical trialCAPRIN2
Miscellaneous
canSAR (ICR)CAPRIN2 (select the gene name)
HarmonizomeCAPRIN2
DataMed IndexCAPRIN2
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCAPRIN2
EVEXCAPRIN2
GoPubMedCAPRIN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 16:48:41 CET 2020
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.