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CAPRIN2 (caprin family member 2)

Identity

Alias_namesC1QDC1
C1q domain containing 1
Alias_symbol (synonym)EEG1
FLJ22569
FLJ11391
caprin-2
RNG140
Other aliasEEG-1
HGNC (Hugo) CAPRIN2
LocusID (NCBI) 65981
Atlas_Id 61413
Location 12p11.21  [Link to chromosome band 12p11]
Location_base_pair Starts at 30709552 and ends at 30754514 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AZGP1 (7q22.1) / CAPRIN2 (12p11.21)CAPRIN2 (12p11.21) / AMN1 (12p11.21)LOC400955 () / CAPRIN2 (12p11.21)
R3HDM2 (12q13.3) / CAPRIN2 (12p11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CAPRIN2   21259
Cards
Entrez_Gene (NCBI)CAPRIN2  65981  caprin family member 2
AliasesC1QDC1; EEG-1; EEG1; RNG140
GeneCards (Weizmann)CAPRIN2
Ensembl hg19 (Hinxton)ENSG00000110888 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000110888 [Gene_View]  chr12:30709552-30754514 [Contig_View]  CAPRIN2 [Vega]
ICGC DataPortalENSG00000110888
TCGA cBioPortalCAPRIN2
AceView (NCBI)CAPRIN2
Genatlas (Paris)CAPRIN2
WikiGenes65981
SOURCE (Princeton)CAPRIN2
Genetics Home Reference (NIH)CAPRIN2
Genomic and cartography
GoldenPath hg38 (UCSC)CAPRIN2  -     chr12:30709552-30754514 -  12p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CAPRIN2  -     12p11.21   [Description]    (hg19-Feb_2009)
EnsemblCAPRIN2 - 12p11.21 [CytoView hg19]  CAPRIN2 - 12p11.21 [CytoView hg38]
Mapping of homologs : NCBICAPRIN2 [Mapview hg19]  CAPRIN2 [Mapview hg38]
OMIM610375   
Gene and transcription
Genbank (Entrez)AB058776 AF326778 AF525416 AK021453 AK024247
RefSeq transcript (Entrez)NM_001002259 NM_001206856 NM_001319842 NM_001319843 NM_001319844 NM_001319845 NM_001319846 NM_023925 NM_032156
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CAPRIN2
Cluster EST : UnigeneHs.234355 [ NCBI ]
CGAP (NCI)Hs.234355
Alternative Splicing GalleryENSG00000110888
Gene ExpressionCAPRIN2 [ NCBI-GEO ]   CAPRIN2 [ EBI - ARRAY_EXPRESS ]   CAPRIN2 [ SEEK ]   CAPRIN2 [ MEM ]
Gene Expression Viewer (FireBrowse)CAPRIN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)65981
GTEX Portal (Tissue expression)CAPRIN2
Human Protein AtlasENSG00000110888-CAPRIN2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IMN6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IMN6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IMN6
Splice isoforms : SwissVarQ6IMN6
PhosPhoSitePlusQ6IMN6
Domaine pattern : Prosite (Expaxy)C1Q (PS50871)   
Domains : Interpro (EBI)C1q_dom    Caprin    Caprin-1_C    Tumour_necrosis_fac-like_dom   
Domain families : Pfam (Sanger)C1q (PF00386)    Caprin-1_C (PF12287)   
Domain families : Pfam (NCBI)pfam00386    pfam12287   
Domain families : Smart (EMBL)C1Q (SM00110)  
Conserved Domain (NCBI)CAPRIN2
DMDM Disease mutations65981
Blocks (Seattle)CAPRIN2
PDB (SRS)4OUL    4OUM   
PDB (PDBSum)4OUL    4OUM   
PDB (IMB)4OUL    4OUM   
PDB (RSDB)4OUL    4OUM   
Structural Biology KnowledgeBase4OUL    4OUM   
SCOP (Structural Classification of Proteins)4OUL    4OUM   
CATH (Classification of proteins structures)4OUL    4OUM   
SuperfamilyQ6IMN6
Human Protein Atlas [tissue]ENSG00000110888-CAPRIN2 [tissue]
Peptide AtlasQ6IMN6
HPRD12711
IPIIPI00855955   IPI00855878   IPI00855852   IPI00855828   IPI00791775   IPI00855991   IPI00154829   IPI01013130   IPI00385020   IPI01015834   IPI00744077   IPI01014935   IPI01013615   IPI01014065   IPI01012691   IPI01013153   
Protein Interaction databases
DIP (DOE-UCLA)Q6IMN6
IntAct (EBI)Q6IMN6
FunCoupENSG00000110888
BioGRIDCAPRIN2
STRING (EMBL)CAPRIN2
ZODIACCAPRIN2
Ontologies - Pathways
QuickGOQ6IMN6
Ontology : AmiGORNA binding  receptor binding  protein binding  nucleus  cytoplasm  mitochondrion  centrosome  cytosol  plasma membrane  negative regulation of translation  negative regulation of cell growth  positive regulation of protein binding  positive regulation of peptidyl-serine phosphorylation  receptor complex  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  positive regulation of dendrite morphogenesis  positive regulation of dendritic spine morphogenesis  positive regulation of canonical Wnt signaling pathway  
Ontology : EGO-EBIRNA binding  receptor binding  protein binding  nucleus  cytoplasm  mitochondrion  centrosome  cytosol  plasma membrane  negative regulation of translation  negative regulation of cell growth  positive regulation of protein binding  positive regulation of peptidyl-serine phosphorylation  receptor complex  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  positive regulation of dendrite morphogenesis  positive regulation of dendritic spine morphogenesis  positive regulation of canonical Wnt signaling pathway  
NDEx NetworkCAPRIN2
Atlas of Cancer Signalling NetworkCAPRIN2
Wikipedia pathwaysCAPRIN2
Orthology - Evolution
OrthoDB65981
GeneTree (enSembl)ENSG00000110888
Phylogenetic Trees/Animal Genes : TreeFamCAPRIN2
HOVERGENQ6IMN6
HOGENOMQ6IMN6
Homologs : HomoloGeneCAPRIN2
Homology/Alignments : Family Browser (UCSC)CAPRIN2
Gene fusions - Rearrangements
Fusion: Tumor Portal CAPRIN2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCAPRIN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CAPRIN2
dbVarCAPRIN2
ClinVarCAPRIN2
1000_GenomesCAPRIN2 
Exome Variant ServerCAPRIN2
ExAC (Exome Aggregation Consortium)ENSG00000110888
GNOMAD BrowserENSG00000110888
Genetic variants : HAPMAP65981
Genomic Variants (DGV)CAPRIN2 [DGVbeta]
DECIPHERCAPRIN2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCAPRIN2 
Mutations
ICGC Data PortalCAPRIN2 
TCGA Data PortalCAPRIN2 
Broad Tumor PortalCAPRIN2
OASIS PortalCAPRIN2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCAPRIN2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCAPRIN2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CAPRIN2
DgiDB (Drug Gene Interaction Database)CAPRIN2
DoCM (Curated mutations)CAPRIN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CAPRIN2 (select a term)
intoGenCAPRIN2
Cancer3DCAPRIN2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610375   
Orphanet
MedgenCAPRIN2
Genetic Testing Registry CAPRIN2
NextProtQ6IMN6 [Medical]
TSGene65981
GENETestsCAPRIN2
Target ValidationCAPRIN2
Huge Navigator CAPRIN2 [HugePedia]
snp3D : Map Gene to Disease65981
BioCentury BCIQCAPRIN2
ClinGenCAPRIN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD65981
Chemical/Pharm GKB GenePA162381044
Clinical trialCAPRIN2
Miscellaneous
canSAR (ICR)CAPRIN2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCAPRIN2
EVEXCAPRIN2
GoPubMedCAPRIN2
iHOPCAPRIN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:41:16 CET 2017

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