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CAPS (calcyphosine)

Identity

Alias_symbol (synonym)CAPS1
MGC126562
Other alias
HGNC (Hugo) CAPS
LocusID (NCBI) 828
Atlas_Id 61414
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 5913644 and ends at 5916211 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CAPS (19p13.3) / CCNG2 (4q21.1)VMAC (19p13.3) / CAPS (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CAPS   1487
Cards
Entrez_Gene (NCBI)CAPS  828  calcyphosine
AliasesCAPS1
GeneCards (Weizmann)CAPS
Ensembl hg19 (Hinxton)ENSG00000105519 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105519 [Gene_View]  chr19:5913644-5916211 [Contig_View]  CAPS [Vega]
ICGC DataPortalENSG00000105519
TCGA cBioPortalCAPS
AceView (NCBI)CAPS
Genatlas (Paris)CAPS
WikiGenes828
SOURCE (Princeton)CAPS
Genetics Home Reference (NIH)CAPS
Genomic and cartography
GoldenPath hg38 (UCSC)CAPS  -     chr19:5913644-5916211 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CAPS  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblCAPS - 19p13.3 [CytoView hg19]  CAPS - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBICAPS [Mapview hg19]  CAPS [Mapview hg38]
OMIM114212   
Gene and transcription
Genbank (Entrez)AK090469 AK226026 AW510425 BC011961 BC019065
RefSeq transcript (Entrez)NM_004058 NM_080590
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CAPS
Cluster EST : UnigeneHs.627868 [ NCBI ]
CGAP (NCI)Hs.627868
Alternative Splicing GalleryENSG00000105519
Gene ExpressionCAPS [ NCBI-GEO ]   CAPS [ EBI - ARRAY_EXPRESS ]   CAPS [ SEEK ]   CAPS [ MEM ]
Gene Expression Viewer (FireBrowse)CAPS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)828
GTEX Portal (Tissue expression)CAPS
Human Protein AtlasENSG00000105519-CAPS [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13938   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13938  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13938
Splice isoforms : SwissVarQ13938
PhosPhoSitePlusQ13938
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom   
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)   
Domain families : Pfam (NCBI)pfam13499   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)CAPS
DMDM Disease mutations828
Blocks (Seattle)CAPS
PDB (SRS)3E3R   
PDB (PDBSum)3E3R   
PDB (IMB)3E3R   
PDB (RSDB)3E3R   
Structural Biology KnowledgeBase3E3R   
SCOP (Structural Classification of Proteins)3E3R   
CATH (Classification of proteins structures)3E3R   
SuperfamilyQ13938
Human Protein Atlas [tissue]ENSG00000105519-CAPS [tissue]
Peptide AtlasQ13938
HPRD00250
IPIIPI00465352   IPI00103067   IPI00792011   
Protein Interaction databases
DIP (DOE-UCLA)Q13938
IntAct (EBI)Q13938
FunCoupENSG00000105519
BioGRIDCAPS
STRING (EMBL)CAPS
ZODIACCAPS
Ontologies - Pathways
QuickGOQ13938
Ontology : AmiGOcalcium ion binding  cytoplasm  vesicle  intracellular signal transduction  extracellular exosome  
Ontology : EGO-EBIcalcium ion binding  cytoplasm  vesicle  intracellular signal transduction  extracellular exosome  
NDEx NetworkCAPS
Atlas of Cancer Signalling NetworkCAPS
Wikipedia pathwaysCAPS
Orthology - Evolution
OrthoDB828
GeneTree (enSembl)ENSG00000105519
Phylogenetic Trees/Animal Genes : TreeFamCAPS
HOVERGENQ13938
HOGENOMQ13938
Homologs : HomoloGeneCAPS
Homology/Alignments : Family Browser (UCSC)CAPS
Gene fusions - Rearrangements
Tumor Fusion PortalCAPS
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCAPS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CAPS
dbVarCAPS
ClinVarCAPS
1000_GenomesCAPS 
Exome Variant ServerCAPS
ExAC (Exome Aggregation Consortium)ENSG00000105519
GNOMAD BrowserENSG00000105519
Genetic variants : HAPMAP828
Genomic Variants (DGV)CAPS [DGVbeta]
DECIPHERCAPS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCAPS 
Mutations
ICGC Data PortalCAPS 
TCGA Data PortalCAPS 
Broad Tumor PortalCAPS
OASIS PortalCAPS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCAPS  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCAPS
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CAPS
DgiDB (Drug Gene Interaction Database)CAPS
DoCM (Curated mutations)CAPS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CAPS (select a term)
intoGenCAPS
Cancer3DCAPS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM114212   
Orphanet
DisGeNETCAPS
MedgenCAPS
Genetic Testing Registry CAPS
NextProtQ13938 [Medical]
TSGene828
GENETestsCAPS
Target ValidationCAPS
Huge Navigator CAPS [HugePedia]
snp3D : Map Gene to Disease828
BioCentury BCIQCAPS
ClinGenCAPS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD828
Chemical/Pharm GKB GenePA26068
Clinical trialCAPS
Miscellaneous
canSAR (ICR)CAPS (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCAPS
EVEXCAPS
GoPubMedCAPS
iHOPCAPS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:38:16 CET 2017

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