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CAPS2 (calcyphosine 2)

Identity

Alias_namescalcyphosphine 2
Other aliasUG0636c06
HGNC (Hugo) CAPS2
LocusID (NCBI) 84698
Atlas_Id 61415
Location 12q21.1  [Link to chromosome band 12q21]
Location_base_pair Starts at 75669759 and ends at 75723836 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CASS4 (20q13.2) / CAPS2 (12q21.1)KCNC2 (12q21.1) / CAPS2 (12q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CAPS2   16471
Cards
Entrez_Gene (NCBI)CAPS2  84698  calcyphosine 2
AliasesUG0636c06
GeneCards (Weizmann)CAPS2
Ensembl hg19 (Hinxton)ENSG00000180881 [Gene_View]  chr12:75669759-75723836 [Contig_View]  CAPS2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000180881 [Gene_View]  chr12:75669759-75723836 [Contig_View]  CAPS2 [Vega]
ICGC DataPortalENSG00000180881
TCGA cBioPortalCAPS2
AceView (NCBI)CAPS2
Genatlas (Paris)CAPS2
WikiGenes84698
SOURCE (Princeton)CAPS2
Genetics Home Reference (NIH)CAPS2
Genomic and cartography
GoldenPath hg19 (UCSC)CAPS2  -     chr12:75669759-75723836 -  12q21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CAPS2  -     12q21.1   [Description]    (hg38-Dec_2013)
EnsemblCAPS2 - 12q21.1 [CytoView hg19]  CAPS2 - 12q21.1 [CytoView hg38]
Mapping of homologs : NCBICAPS2 [Mapview hg19]  CAPS2 [Mapview hg38]
OMIM607724   
Gene and transcription
Genbank (Entrez)AF251056 AF351611 AK091839 AK092274 BC033860
RefSeq transcript (Entrez)NM_001286547 NM_001286548 NM_001286549 NM_032606
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)CAPS2
Cluster EST : UnigeneHs.733835 [ NCBI ]
CGAP (NCI)Hs.733835
Alternative Splicing GalleryENSG00000180881
Gene ExpressionCAPS2 [ NCBI-GEO ]   CAPS2 [ EBI - ARRAY_EXPRESS ]   CAPS2 [ SEEK ]   CAPS2 [ MEM ]
Gene Expression Viewer (FireBrowse)CAPS2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84698
GTEX Portal (Tissue expression)CAPS2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXY5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXY5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXY5
Splice isoforms : SwissVarQ9BXY5
PhosPhoSitePlusQ9BXY5
Domaine pattern : Prosite (Expaxy)EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_hand_dom   
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)   
Domain families : Pfam (NCBI)pfam13499   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)CAPS2
DMDM Disease mutations84698
Blocks (Seattle)CAPS2
SuperfamilyQ9BXY5
Human Protein AtlasENSG00000180881
Peptide AtlasQ9BXY5
HPRD09659
IPIIPI00936567   IPI00000375   IPI01022488   IPI01022924   IPI00448322   IPI00916221   IPI00973854   IPI00915938   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXY5
IntAct (EBI)Q9BXY5
FunCoupENSG00000180881
BioGRIDCAPS2
STRING (EMBL)CAPS2
ZODIACCAPS2
Ontologies - Pathways
QuickGOQ9BXY5
Ontology : AmiGOcalcium ion binding  
Ontology : EGO-EBIcalcium ion binding  
NDEx NetworkCAPS2
Atlas of Cancer Signalling NetworkCAPS2
Wikipedia pathwaysCAPS2
Orthology - Evolution
OrthoDB84698
GeneTree (enSembl)ENSG00000180881
Phylogenetic Trees/Animal Genes : TreeFamCAPS2
HOVERGENQ9BXY5
HOGENOMQ9BXY5
Homologs : HomoloGeneCAPS2
Homology/Alignments : Family Browser (UCSC)CAPS2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCAPS2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CAPS2
dbVarCAPS2
ClinVarCAPS2
1000_GenomesCAPS2 
Exome Variant ServerCAPS2
ExAC (Exome Aggregation Consortium)CAPS2 (select the gene name)
Genetic variants : HAPMAP84698
Genomic Variants (DGV)CAPS2 [DGVbeta]
DECIPHER (Syndromes)12:75669759-75723836  ENSG00000180881
CONAN: Copy Number AnalysisCAPS2 
Mutations
ICGC Data PortalCAPS2 
TCGA Data PortalCAPS2 
Broad Tumor PortalCAPS2
OASIS PortalCAPS2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCAPS2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCAPS2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CAPS2
DgiDB (Drug Gene Interaction Database)CAPS2
DoCM (Curated mutations)CAPS2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CAPS2 (select a term)
intoGenCAPS2
Cancer3DCAPS2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607724   
Orphanet
MedgenCAPS2
Genetic Testing Registry CAPS2
NextProtQ9BXY5 [Medical]
TSGene84698
GENETestsCAPS2
Huge Navigator CAPS2 [HugePedia]
snp3D : Map Gene to Disease84698
BioCentury BCIQCAPS2
ClinGenCAPS2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84698
Chemical/Pharm GKB GenePA38405
Clinical trialCAPS2
Miscellaneous
canSAR (ICR)CAPS2 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCAPS2
EVEXCAPS2
GoPubMedCAPS2
iHOPCAPS2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:58:05 CET 2017

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