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CAPS2 (calcyphosine 2)

Identity

Alias (NCBI)UG0636c06
HGNC (Hugo) CAPS2
HGNC Previous namecalcyphosphine 2
LocusID (NCBI) 84698
Atlas_Id 61415
Location 12q21.1  [Link to chromosome band 12q21]
Location_base_pair Starts at 75275979 and ends at 75330324 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CASS4 (20q13.2) / CAPS2 (12q21.1)KCNC2 (12q21.1) / CAPS2 (12q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(10;12)(p12;q21) MLLT10/CAPS2
t(10;12)(p12;q21) MLLT10/CAPS2


External links

 

Nomenclature
HGNC (Hugo)CAPS2   16471
Cards
Entrez_Gene (NCBI)CAPS2    calcyphosine 2
AliasesUG0636c06
GeneCards (Weizmann)CAPS2
Ensembl hg19 (Hinxton)ENSG00000180881 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180881 [Gene_View]  ENSG00000180881 [Sequence]  chr12:75275979-75330324 [Contig_View]  CAPS2 [Vega]
ICGC DataPortalENSG00000180881
TCGA cBioPortalCAPS2
AceView (NCBI)CAPS2
Genatlas (Paris)CAPS2
SOURCE (Princeton)CAPS2
Genetics Home Reference (NIH)CAPS2
Genomic and cartography
GoldenPath hg38 (UCSC)CAPS2  -     chr12:75275979-75330324 -  12q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CAPS2  -     12q21.1   [Description]    (hg19-Feb_2009)
GoldenPathCAPS2 - 12q21.1 [CytoView hg19]  CAPS2 - 12q21.1 [CytoView hg38]
ImmunoBaseENSG00000180881
Genome Data Viewer NCBICAPS2 [Mapview hg19]  
OMIM607724   
Gene and transcription
Genbank (Entrez)AF251056 AF351611 AK091839 AK092274 BC033860
RefSeq transcript (Entrez)NM_001286547 NM_001286548 NM_001355023 NM_001355024 NM_001355025 NM_001355026 NM_001355027 NM_001355030 NM_001355031 NM_001355032 NM_001355033 NM_032606
Consensus coding sequences : CCDS (NCBI)CAPS2
Gene ExpressionCAPS2 [ NCBI-GEO ]   CAPS2 [ EBI - ARRAY_EXPRESS ]   CAPS2 [ SEEK ]   CAPS2 [ MEM ]
Gene Expression Viewer (FireBrowse)CAPS2 [ Firebrowse - Broad ]
GenevisibleExpression of CAPS2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84698
GTEX Portal (Tissue expression)CAPS2
Human Protein AtlasENSG00000180881-CAPS2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXY5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXY5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXY5
PhosPhoSitePlusQ9BXY5
Domaine pattern : Prosite (Expaxy)EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_hand_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)CAPS2
SuperfamilyQ9BXY5
AlphaFold pdb e-kbQ9BXY5   
Human Protein Atlas [tissue]ENSG00000180881-CAPS2 [tissue]
HPRD09659
Protein Interaction databases
DIP (DOE-UCLA)Q9BXY5
IntAct (EBI)Q9BXY5
BioGRIDCAPS2
STRING (EMBL)CAPS2
ZODIACCAPS2
Ontologies - Pathways
QuickGOQ9BXY5
Ontology : AmiGOcalcium ion binding  
Ontology : EGO-EBIcalcium ion binding  
NDEx NetworkCAPS2
Atlas of Cancer Signalling NetworkCAPS2
Wikipedia pathwaysCAPS2
Orthology - Evolution
OrthoDB84698
GeneTree (enSembl)ENSG00000180881
Phylogenetic Trees/Animal Genes : TreeFamCAPS2
Homologs : HomoloGeneCAPS2
Homology/Alignments : Family Browser (UCSC)CAPS2
Gene fusions - Rearrangements
Fusion : QuiverCAPS2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCAPS2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CAPS2
dbVarCAPS2
ClinVarCAPS2
MonarchCAPS2
1000_GenomesCAPS2 
Exome Variant ServerCAPS2
GNOMAD BrowserENSG00000180881
Varsome BrowserCAPS2
ACMGCAPS2 variants
VarityQ9BXY5
Genomic Variants (DGV)CAPS2 [DGVbeta]
DECIPHERCAPS2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCAPS2 
Mutations
ICGC Data PortalCAPS2 
TCGA Data PortalCAPS2 
Broad Tumor PortalCAPS2
OASIS PortalCAPS2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCAPS2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCAPS2
Mutations and Diseases : HGMDCAPS2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCAPS2
DgiDB (Drug Gene Interaction Database)CAPS2
DoCM (Curated mutations)CAPS2
CIViC (Clinical Interpretations of Variants in Cancer)CAPS2
Cancer3DCAPS2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607724   
Orphanet
DisGeNETCAPS2
MedgenCAPS2
Genetic Testing Registry CAPS2
NextProtQ9BXY5 [Medical]
GENETestsCAPS2
Target ValidationCAPS2
Huge Navigator CAPS2 [HugePedia]
ClinGenCAPS2
Clinical trials, drugs, therapy
MyCancerGenomeCAPS2
Protein Interactions : CTDCAPS2
Pharm GKB GenePA38405
PharosQ9BXY5
Clinical trialCAPS2
Miscellaneous
canSAR (ICR)CAPS2
HarmonizomeCAPS2
DataMed IndexCAPS2
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCAPS2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:44:47 CEST 2021

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