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CAPSL (calcyphosine like)

Identity

Alias_namescalcyphosine-like
Alias_symbol (synonym)MGC26610
Other alias-
HGNC (Hugo) CAPSL
LocusID (NCBI) 133690
Atlas_Id 61416
Location 5p13.2  [Link to chromosome band 5p13]
Location_base_pair Starts at 35904296 and ends at 35938635 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CAPSL   28375
Cards
Entrez_Gene (NCBI)CAPSL  133690  calcyphosine like
Aliases
GeneCards (Weizmann)CAPSL
Ensembl hg19 (Hinxton)ENSG00000152611 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152611 [Gene_View]  chr5:35904296-35938635 [Contig_View]  CAPSL [Vega]
ICGC DataPortalENSG00000152611
TCGA cBioPortalCAPSL
AceView (NCBI)CAPSL
Genatlas (Paris)CAPSL
WikiGenes133690
SOURCE (Princeton)CAPSL
Genetics Home Reference (NIH)CAPSL
Genomic and cartography
GoldenPath hg38 (UCSC)CAPSL  -     chr5:35904296-35938635 -  5p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CAPSL  -     5p13.2   [Description]    (hg19-Feb_2009)
EnsemblCAPSL - 5p13.2 [CytoView hg19]  CAPSL - 5p13.2 [CytoView hg38]
Mapping of homologs : NCBICAPSL [Mapview hg19]  CAPSL [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC017586 BM975803 CD687387 JF432884 W25222
RefSeq transcript (Entrez)NM_001042625 NM_144647
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CAPSL
Cluster EST : UnigeneHs.55150 [ NCBI ]
CGAP (NCI)Hs.55150
Alternative Splicing GalleryENSG00000152611
Gene ExpressionCAPSL [ NCBI-GEO ]   CAPSL [ EBI - ARRAY_EXPRESS ]   CAPSL [ SEEK ]   CAPSL [ MEM ]
Gene Expression Viewer (FireBrowse)CAPSL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)133690
GTEX Portal (Tissue expression)CAPSL
Human Protein AtlasENSG00000152611-CAPSL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WWF8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WWF8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WWF8
Splice isoforms : SwissVarQ8WWF8
PhosPhoSitePlusQ8WWF8
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)CAPSL    EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom   
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)   
Domain families : Pfam (NCBI)pfam13499   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)CAPSL
DMDM Disease mutations133690
Blocks (Seattle)CAPSL
SuperfamilyQ8WWF8
Human Protein Atlas [tissue]ENSG00000152611-CAPSL [tissue]
Peptide AtlasQ8WWF8
HPRD14506
IPIIPI00154885   IPI00964321   IPI00964011   
Protein Interaction databases
DIP (DOE-UCLA)Q8WWF8
IntAct (EBI)Q8WWF8
FunCoupENSG00000152611
BioGRIDCAPSL
STRING (EMBL)CAPSL
ZODIACCAPSL
Ontologies - Pathways
QuickGOQ8WWF8
Ontology : AmiGOcalcium ion binding  cytoplasm  
Ontology : EGO-EBIcalcium ion binding  cytoplasm  
NDEx NetworkCAPSL
Atlas of Cancer Signalling NetworkCAPSL
Wikipedia pathwaysCAPSL
Orthology - Evolution
OrthoDB133690
GeneTree (enSembl)ENSG00000152611
Phylogenetic Trees/Animal Genes : TreeFamCAPSL
HOVERGENQ8WWF8
HOGENOMQ8WWF8
Homologs : HomoloGeneCAPSL
Homology/Alignments : Family Browser (UCSC)CAPSL
Gene fusions - Rearrangements
Tumor Fusion PortalCAPSL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCAPSL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CAPSL
dbVarCAPSL
ClinVarCAPSL
1000_GenomesCAPSL 
Exome Variant ServerCAPSL
ExAC (Exome Aggregation Consortium)ENSG00000152611
GNOMAD BrowserENSG00000152611
Genetic variants : HAPMAP133690
Genomic Variants (DGV)CAPSL [DGVbeta]
DECIPHERCAPSL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCAPSL 
Mutations
ICGC Data PortalCAPSL 
TCGA Data PortalCAPSL 
Broad Tumor PortalCAPSL
OASIS PortalCAPSL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCAPSL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCAPSL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CAPSL
DgiDB (Drug Gene Interaction Database)CAPSL
DoCM (Curated mutations)CAPSL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CAPSL (select a term)
intoGenCAPSL
Cancer3DCAPSL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCAPSL
MedgenCAPSL
Genetic Testing Registry CAPSL
NextProtQ8WWF8 [Medical]
TSGene133690
GENETestsCAPSL
Target ValidationCAPSL
Huge Navigator CAPSL [HugePedia]
snp3D : Map Gene to Disease133690
BioCentury BCIQCAPSL
ClinGenCAPSL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD133690
Chemical/Pharm GKB GenePA142672204
Clinical trialCAPSL
Miscellaneous
canSAR (ICR)CAPSL (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCAPSL
EVEXCAPSL
GoPubMedCAPSL
iHOPCAPSL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:11:30 CET 2017

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