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CAPZA3 (capping actin protein of muscle Z-line alpha subunit 3)

Identity

Alias_namescapping protein (actin filament) muscle Z-line, alpha 3
Alias_symbol (synonym)Gsg3
CAPPA3
Other aliasHEL-S-86
HGNC (Hugo) CAPZA3
LocusID (NCBI) 93661
Atlas_Id 61417
Location 12p12.3  [Link to chromosome band 12p12]
Location_base_pair Starts at 18738111 and ends at 18739188 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CAPZA3   24205
Cards
Entrez_Gene (NCBI)CAPZA3  93661  capping actin protein of muscle Z-line alpha subunit 3
AliasesCAPPA3; Gsg3; HEL-S-86
GeneCards (Weizmann)CAPZA3
Ensembl hg19 (Hinxton)ENSG00000177938 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177938 [Gene_View]  chr12:18738111-18739188 [Contig_View]  CAPZA3 [Vega]
ICGC DataPortalENSG00000177938
TCGA cBioPortalCAPZA3
AceView (NCBI)CAPZA3
Genatlas (Paris)CAPZA3
WikiGenes93661
SOURCE (Princeton)CAPZA3
Genetics Home Reference (NIH)CAPZA3
Genomic and cartography
GoldenPath hg38 (UCSC)CAPZA3  -     chr12:18738111-18739188 +  12p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CAPZA3  -     12p12.3   [Description]    (hg19-Feb_2009)
EnsemblCAPZA3 - 12p12.3 [CytoView hg19]  CAPZA3 - 12p12.3 [CytoView hg38]
Mapping of homologs : NCBICAPZA3 [Mapview hg19]  CAPZA3 [Mapview hg38]
OMIM608722   
Gene and transcription
Genbank (Entrez)AB053259 AK058174 BC016745 BG772483 GQ472212
RefSeq transcript (Entrez)NM_033328
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CAPZA3
Cluster EST : UnigeneHs.131288 [ NCBI ]
CGAP (NCI)Hs.131288
Alternative Splicing GalleryENSG00000177938
Gene ExpressionCAPZA3 [ NCBI-GEO ]   CAPZA3 [ EBI - ARRAY_EXPRESS ]   CAPZA3 [ SEEK ]   CAPZA3 [ MEM ]
Gene Expression Viewer (FireBrowse)CAPZA3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93661
GTEX Portal (Tissue expression)CAPZA3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96KX2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96KX2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96KX2
Splice isoforms : SwissVarQ96KX2
PhosPhoSitePlusQ96KX2
Domaine pattern : Prosite (Expaxy)F_ACTIN_CAPPING_A_1 (PS00748)    F_ACTIN_CAPPING_A_2 (PS00749)   
Domains : Interpro (EBI)CapZ_alpha    F-actin_cap_asu_CS   
Domain families : Pfam (Sanger)F-actin_cap_A (PF01267)   
Domain families : Pfam (NCBI)pfam01267   
Conserved Domain (NCBI)CAPZA3
DMDM Disease mutations93661
Blocks (Seattle)CAPZA3
SuperfamilyQ96KX2
Human Protein AtlasENSG00000177938
Peptide AtlasQ96KX2
HPRD12282
IPIIPI00102106   
Protein Interaction databases
DIP (DOE-UCLA)Q96KX2
IntAct (EBI)Q96KX2
FunCoupENSG00000177938
BioGRIDCAPZA3
STRING (EMBL)CAPZA3
ZODIACCAPZA3
Ontologies - Pathways
QuickGOQ96KX2
Ontology : AmiGOacrosomal vesicle  actin binding  nucleus  spermatid development  F-actin capping protein complex  membrane  cortical cytoskeleton  barbed-end actin filament capping  
Ontology : EGO-EBIacrosomal vesicle  actin binding  nucleus  spermatid development  F-actin capping protein complex  membrane  cortical cytoskeleton  barbed-end actin filament capping  
NDEx NetworkCAPZA3
Atlas of Cancer Signalling NetworkCAPZA3
Wikipedia pathwaysCAPZA3
Orthology - Evolution
OrthoDB93661
GeneTree (enSembl)ENSG00000177938
Phylogenetic Trees/Animal Genes : TreeFamCAPZA3
HOVERGENQ96KX2
HOGENOMQ96KX2
Homologs : HomoloGeneCAPZA3
Homology/Alignments : Family Browser (UCSC)CAPZA3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCAPZA3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CAPZA3
dbVarCAPZA3
ClinVarCAPZA3
1000_GenomesCAPZA3 
Exome Variant ServerCAPZA3
ExAC (Exome Aggregation Consortium)CAPZA3 (select the gene name)
Genetic variants : HAPMAP93661
Genomic Variants (DGV)CAPZA3 [DGVbeta]
DECIPHERCAPZA3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCAPZA3 
Mutations
ICGC Data PortalCAPZA3 
TCGA Data PortalCAPZA3 
Broad Tumor PortalCAPZA3
OASIS PortalCAPZA3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCAPZA3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCAPZA3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CAPZA3
DgiDB (Drug Gene Interaction Database)CAPZA3
DoCM (Curated mutations)CAPZA3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CAPZA3 (select a term)
intoGenCAPZA3
Cancer3DCAPZA3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608722   
Orphanet
MedgenCAPZA3
Genetic Testing Registry CAPZA3
NextProtQ96KX2 [Medical]
TSGene93661
GENETestsCAPZA3
Target ValidationCAPZA3
Huge Navigator CAPZA3 [HugePedia]
snp3D : Map Gene to Disease93661
BioCentury BCIQCAPZA3
ClinGenCAPZA3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD93661
Chemical/Pharm GKB GenePA134990260
Clinical trialCAPZA3
Miscellaneous
canSAR (ICR)CAPZA3 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCAPZA3
EVEXCAPZA3
GoPubMedCAPZA3
iHOPCAPZA3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:42:05 CEST 2017

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