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CARD17 (caspase recruitment domain family member 17)

Identity

Alias (NCBI)INCA
HGNC (Hugo) CARD17
HGNC Alias symbINCA
HGNC Alias nameInhibitory CARD
HGNC Previous namecaspase recruitment domain family, member 17
LocusID (NCBI) 440068
Atlas_Id 61418
Location 11q22.3  [Link to chromosome band 11q22]
Location_base_pair Starts at 105092469 and ends at 105101431 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)CARD17   33827
Cards
Entrez_Gene (NCBI)CARD17    caspase recruitment domain family member 17
AliasesINCA
GeneCards (Weizmann)CARD17
Ensembl hg19 (Hinxton)ENSG00000255221 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000255221 [Gene_View]  ENSG00000255221 [Sequence]  chr11:105092469-105101431 [Contig_View]  CARD17 [Vega]
ICGC DataPortalENSG00000255221
TCGA cBioPortalCARD17
AceView (NCBI)CARD17
Genatlas (Paris)CARD17
SOURCE (Princeton)CARD17
Genetics Home Reference (NIH)CARD17
Genomic and cartography
GoldenPath hg38 (UCSC)CARD17  -     chr11:105092469-105101431 -  11q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CARD17  -     11q22.3   [Description]    (hg19-Feb_2009)
GoldenPathCARD17 - 11q22.3 [CytoView hg19]  CARD17 - 11q22.3 [CytoView hg38]
ImmunoBaseENSG00000255221
genome Data Viewer NCBICARD17 [Mapview hg19]  
OMIM609490   
Gene and transcription
Genbank (Entrez)AY761064
RefSeq transcript (Entrez)NM_001007232
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CARD17
Alternative Splicing GalleryENSG00000255221
Gene ExpressionCARD17 [ NCBI-GEO ]   CARD17 [ EBI - ARRAY_EXPRESS ]   CARD17 [ SEEK ]   CARD17 [ MEM ]
Gene Expression Viewer (FireBrowse)CARD17 [ Firebrowse - Broad ]
GenevisibleExpression of CARD17 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440068
GTEX Portal (Tissue expression)CARD17
Human Protein AtlasENSG00000255221-CARD17 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5XLA6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5XLA6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5XLA6
Splice isoforms : SwissVarQ5XLA6
PhosPhoSitePlusQ5XLA6
Domaine pattern : Prosite (Expaxy)CARD (PS50209)   
Domains : Interpro (EBI)CARD    DEATH-like_dom_sf   
Domain families : Pfam (Sanger)CARD (PF00619)   
Domain families : Pfam (NCBI)pfam00619   
Domain families : Smart (EMBL)CARD (SM00114)  
Conserved Domain (NCBI)CARD17
Blocks (Seattle)CARD17
SuperfamilyQ5XLA6
Human Protein Atlas [tissue]ENSG00000255221-CARD17 [tissue]
Peptide AtlasQ5XLA6
HPRD17149
IPIIPI00964642   
Protein Interaction databases
DIP (DOE-UCLA)Q5XLA6
IntAct (EBI)Q5XLA6
BioGRIDCARD17
STRING (EMBL)CARD17
ZODIACCARD17
Ontologies - Pathways
QuickGOQ5XLA6
Ontology : AmiGOcysteine-type endopeptidase inhibitor activity  protein binding  cytoplasm  negative regulation of endopeptidase activity  protein-containing complex  protein-containing complex  identical protein binding  regulation of apoptotic process  negative regulation of interleukin-1 beta secretion  negative regulation of interleukin-1 beta secretion  cellular response to lipopolysaccharide  caspase binding  caspase binding  
Ontology : EGO-EBIcysteine-type endopeptidase inhibitor activity  protein binding  cytoplasm  negative regulation of endopeptidase activity  protein-containing complex  protein-containing complex  identical protein binding  regulation of apoptotic process  negative regulation of interleukin-1 beta secretion  negative regulation of interleukin-1 beta secretion  cellular response to lipopolysaccharide  caspase binding  caspase binding  
NDEx NetworkCARD17
Atlas of Cancer Signalling NetworkCARD17
Wikipedia pathwaysCARD17
Orthology - Evolution
OrthoDB440068
GeneTree (enSembl)ENSG00000255221
Phylogenetic Trees/Animal Genes : TreeFamCARD17
HOGENOMQ5XLA6
Homologs : HomoloGeneCARD17
Homology/Alignments : Family Browser (UCSC)CARD17
Gene fusions - Rearrangements
Fusion : QuiverCARD17
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCARD17 [hg38]
dbVarCARD17
ClinVarCARD17
MonarchCARD17
1000_GenomesCARD17 
Exome Variant ServerCARD17
GNOMAD BrowserENSG00000255221
Varsome BrowserCARD17
Genomic Variants (DGV)CARD17 [DGVbeta]
DECIPHERCARD17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCARD17 
Mutations
ICGC Data PortalCARD17 
TCGA Data PortalCARD17 
Broad Tumor PortalCARD17
OASIS PortalCARD17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCARD17  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCARD17
Mutations and Diseases : HGMDCARD17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CARD17
DgiDB (Drug Gene Interaction Database)CARD17
DoCM (Curated mutations)CARD17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CARD17 (select a term)
intoGenCARD17
Cancer3DCARD17(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609490   
Orphanet
DisGeNETCARD17
MedgenCARD17
Genetic Testing Registry CARD17
NextProtQ5XLA6 [Medical]
GENETestsCARD17
Target ValidationCARD17
Huge Navigator CARD17 [HugePedia]
ClinGenCARD17
Clinical trials, drugs, therapy
MyCancerGenomeCARD17
Protein Interactions : CTD
Pharm GKB GenePA164717641
Clinical trialCARD17
Miscellaneous
canSAR (ICR)CARD17 (select the gene name)
HarmonizomeCARD17
DataMed IndexCARD17
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCARD17
EVEXCARD17
GoPubMedCARD17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:48:42 CET 2020

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