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CARD17 (caspase recruitment domain family member 17)

Identity

Alias_namescaspase recruitment domain family, member 17
Alias_symbol (synonym)INCA
Other alias
HGNC (Hugo) CARD17
LocusID (NCBI) 440068
Atlas_Id 61418
Location 11q22.3  [Link to chromosome band 11q22]
Location_base_pair Starts at 105092469 and ends at 105101431 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CARD17   33827
Cards
Entrez_Gene (NCBI)CARD17  440068  caspase recruitment domain family member 17
AliasesINCA
GeneCards (Weizmann)CARD17
Ensembl hg19 (Hinxton)ENSG00000255221 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000255221 [Gene_View]  chr11:105092469-105101431 [Contig_View]  CARD17 [Vega]
ICGC DataPortalENSG00000255221
TCGA cBioPortalCARD17
AceView (NCBI)CARD17
Genatlas (Paris)CARD17
WikiGenes440068
SOURCE (Princeton)CARD17
Genetics Home Reference (NIH)CARD17
Genomic and cartography
GoldenPath hg38 (UCSC)CARD17  -     chr11:105092469-105101431 -  11q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CARD17  -     11q22.3   [Description]    (hg19-Feb_2009)
EnsemblCARD17 - 11q22.3 [CytoView hg19]  CARD17 - 11q22.3 [CytoView hg38]
Mapping of homologs : NCBICARD17 [Mapview hg19]  CARD17 [Mapview hg38]
OMIM609490   
Gene and transcription
Genbank (Entrez)AY761064 BC146363
RefSeq transcript (Entrez)NM_001007232
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CARD17
Cluster EST : UnigeneHs.732627 [ NCBI ]
CGAP (NCI)Hs.732627
Alternative Splicing GalleryENSG00000255221
Gene ExpressionCARD17 [ NCBI-GEO ]   CARD17 [ EBI - ARRAY_EXPRESS ]   CARD17 [ SEEK ]   CARD17 [ MEM ]
Gene Expression Viewer (FireBrowse)CARD17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440068
GTEX Portal (Tissue expression)CARD17
Human Protein AtlasENSG00000255221-CARD17 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5XLA6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5XLA6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5XLA6
Splice isoforms : SwissVarQ5XLA6
PhosPhoSitePlusQ5XLA6
Domaine pattern : Prosite (Expaxy)CARD (PS50209)   
Domains : Interpro (EBI)CARD    DEATH-like_dom   
Domain families : Pfam (Sanger)CARD (PF00619)   
Domain families : Pfam (NCBI)pfam00619   
Domain families : Smart (EMBL)CARD (SM00114)  
Conserved Domain (NCBI)CARD17
DMDM Disease mutations440068
Blocks (Seattle)CARD17
SuperfamilyQ5XLA6
Human Protein Atlas [tissue]ENSG00000255221-CARD17 [tissue]
Peptide AtlasQ5XLA6
HPRD17149
IPIIPI00964642   
Protein Interaction databases
DIP (DOE-UCLA)Q5XLA6
IntAct (EBI)Q5XLA6
FunCoupENSG00000255221
BioGRIDCARD17
STRING (EMBL)CARD17
ZODIACCARD17
Ontologies - Pathways
QuickGOQ5XLA6
Ontology : AmiGOcysteine-type endopeptidase inhibitor activity  cytoplasm  negative regulation of endopeptidase activity  regulation of apoptotic process  
Ontology : EGO-EBIcysteine-type endopeptidase inhibitor activity  cytoplasm  negative regulation of endopeptidase activity  regulation of apoptotic process  
NDEx NetworkCARD17
Atlas of Cancer Signalling NetworkCARD17
Wikipedia pathwaysCARD17
Orthology - Evolution
OrthoDB440068
GeneTree (enSembl)ENSG00000255221
Phylogenetic Trees/Animal Genes : TreeFamCARD17
HOVERGENQ5XLA6
HOGENOMQ5XLA6
Homologs : HomoloGeneCARD17
Homology/Alignments : Family Browser (UCSC)CARD17
Gene fusions - Rearrangements
Fusion: Tumor Portal CARD17
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCARD17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CARD17
dbVarCARD17
ClinVarCARD17
1000_GenomesCARD17 
Exome Variant ServerCARD17
ExAC (Exome Aggregation Consortium)ENSG00000255221
GNOMAD BrowserENSG00000255221
Genetic variants : HAPMAP440068
Genomic Variants (DGV)CARD17 [DGVbeta]
DECIPHERCARD17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCARD17 
Mutations
ICGC Data PortalCARD17 
TCGA Data PortalCARD17 
Broad Tumor PortalCARD17
OASIS PortalCARD17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCARD17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCARD17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CARD17
DgiDB (Drug Gene Interaction Database)CARD17
DoCM (Curated mutations)CARD17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CARD17 (select a term)
intoGenCARD17
Cancer3DCARD17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609490   
Orphanet
MedgenCARD17
Genetic Testing Registry CARD17
NextProtQ5XLA6 [Medical]
TSGene440068
GENETestsCARD17
Target ValidationCARD17
Huge Navigator CARD17 [HugePedia]
snp3D : Map Gene to Disease440068
BioCentury BCIQCARD17
ClinGenCARD17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440068
Chemical/Pharm GKB GenePA164717641
Clinical trialCARD17
Miscellaneous
canSAR (ICR)CARD17 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCARD17
EVEXCARD17
GoPubMedCARD17
iHOPCARD17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:41:17 CET 2017

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