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CARD19 (caspase recruitment domain family member 19)

Identity

Alias_namesC9orf89
chromosome 9 open reading frame 89
caspase recruitment domain family, member 19
Alias_symbol (synonym)MGC11115
bA370F5.1
BinCARD
Other alias
HGNC (Hugo) CARD19
LocusID (NCBI) 84270
Atlas_Id 77812
Location 9q22.31  [Link to chromosome band 9q22]
Location_base_pair Starts at 93096123 and ends at 93113295 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TGOLN2 (2p11.2) / CARD19 (9q22.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CARD19   28148
Cards
Entrez_Gene (NCBI)CARD19  84270  caspase recruitment domain family member 19
AliasesBinCARD; C9orf89
GeneCards (Weizmann)CARD19
Ensembl hg19 (Hinxton)ENSG00000165233 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165233 [Gene_View]  chr9:93096123-93113295 [Contig_View]  CARD19 [Vega]
ICGC DataPortalENSG00000165233
TCGA cBioPortalCARD19
AceView (NCBI)CARD19
Genatlas (Paris)CARD19
WikiGenes84270
SOURCE (Princeton)CARD19
Genetics Home Reference (NIH)CARD19
Genomic and cartography
GoldenPath hg38 (UCSC)CARD19  -     chr9:93096123-93113295 +  9q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CARD19  -     9q22.31   [Description]    (hg19-Feb_2009)
EnsemblCARD19 - 9q22.31 [CytoView hg19]  CARD19 - 9q22.31 [CytoView hg38]
Mapping of homologs : NCBICARD19 [Mapview hg19]  CARD19 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA804861 AK057716 AK091611 AK097977 AK128259
RefSeq transcript (Entrez)NM_001318010 NM_001318011 NM_032310
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CARD19
Cluster EST : UnigeneHs.434213 [ NCBI ]
CGAP (NCI)Hs.434213
Alternative Splicing GalleryENSG00000165233
Gene ExpressionCARD19 [ NCBI-GEO ]   CARD19 [ EBI - ARRAY_EXPRESS ]   CARD19 [ SEEK ]   CARD19 [ MEM ]
Gene Expression Viewer (FireBrowse)CARD19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84270
GTEX Portal (Tissue expression)CARD19
Human Protein AtlasENSG00000165233-CARD19 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LW7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LW7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LW7
Splice isoforms : SwissVarQ96LW7
PhosPhoSitePlusQ96LW7
Domains : Interpro (EBI)DEATH-like_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CARD19
DMDM Disease mutations84270
Blocks (Seattle)CARD19
PDB (SRS)4DWN    4FH0   
PDB (PDBSum)4DWN    4FH0   
PDB (IMB)4DWN    4FH0   
PDB (RSDB)4DWN    4FH0   
Structural Biology KnowledgeBase4DWN    4FH0   
SCOP (Structural Classification of Proteins)4DWN    4FH0   
CATH (Classification of proteins structures)4DWN    4FH0   
SuperfamilyQ96LW7
Human Protein Atlas [tissue]ENSG00000165233-CARD19 [tissue]
Peptide AtlasQ96LW7
HPRD12985
IPIIPI00336153   IPI00177808   
Protein Interaction databases
DIP (DOE-UCLA)Q96LW7
IntAct (EBI)Q96LW7
FunCoupENSG00000165233
BioGRIDCARD19
STRING (EMBL)CARD19
ZODIACCARD19
Ontologies - Pathways
QuickGOQ96LW7
Ontology : AmiGOnucleus  mitochondrion  endoplasmic reticulum membrane  cytosol  integral component of membrane  mitochondrial membrane  negative regulation of I-kappaB kinase/NF-kappaB signaling  CARD domain binding  
Ontology : EGO-EBInucleus  mitochondrion  endoplasmic reticulum membrane  cytosol  integral component of membrane  mitochondrial membrane  negative regulation of I-kappaB kinase/NF-kappaB signaling  CARD domain binding  
NDEx NetworkCARD19
Atlas of Cancer Signalling NetworkCARD19
Wikipedia pathwaysCARD19
Orthology - Evolution
OrthoDB84270
GeneTree (enSembl)ENSG00000165233
Phylogenetic Trees/Animal Genes : TreeFamCARD19
HOVERGENQ96LW7
HOGENOMQ96LW7
Homologs : HomoloGeneCARD19
Homology/Alignments : Family Browser (UCSC)CARD19
Gene fusions - Rearrangements
Tumor Fusion PortalCARD19
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCARD19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CARD19
dbVarCARD19
ClinVarCARD19
1000_GenomesCARD19 
Exome Variant ServerCARD19
ExAC (Exome Aggregation Consortium)ENSG00000165233
GNOMAD BrowserENSG00000165233
Genetic variants : HAPMAP84270
Genomic Variants (DGV)CARD19 [DGVbeta]
DECIPHERCARD19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCARD19 
Mutations
ICGC Data PortalCARD19 
TCGA Data PortalCARD19 
Broad Tumor PortalCARD19
OASIS PortalCARD19 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCARD19
BioMutasearch CARD19
DgiDB (Drug Gene Interaction Database)CARD19
DoCM (Curated mutations)CARD19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CARD19 (select a term)
intoGenCARD19
Cancer3DCARD19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCARD19
MedgenCARD19
Genetic Testing Registry CARD19
NextProtQ96LW7 [Medical]
TSGene84270
GENETestsCARD19
Target ValidationCARD19
Huge Navigator CARD19 [HugePedia]
snp3D : Map Gene to Disease84270
BioCentury BCIQCARD19
ClinGenCARD19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84270
Chemical/Pharm GKB GenePA134909664
Clinical trialCARD19
Miscellaneous
canSAR (ICR)CARD19 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCARD19
EVEXCARD19
GoPubMedCARD19
iHOPCARD19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:22:38 CET 2017

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