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CARD6 (caspase recruitment domain family member 6)

Identity

Alias_namescaspase recruitment domain family
Alias_symbol (synonym)CINCIN1
Other alias
HGNC (Hugo) CARD6
LocusID (NCBI) 84674
Atlas_Id 43192
Location 5p13.1  [Link to chromosome band 5p13]
Location_base_pair Starts at 40841308 and ends at 40855354 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CXCL9 (4q21.1) / CARD6 (5p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CARD6   16394
Cards
Entrez_Gene (NCBI)CARD6  84674  caspase recruitment domain family member 6
AliasesCINCIN1
GeneCards (Weizmann)CARD6
Ensembl hg19 (Hinxton)ENSG00000132357 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132357 [Gene_View]  ENSG00000132357 [Sequence]  chr5:40841308-40855354 [Contig_View]  CARD6 [Vega]
ICGC DataPortalENSG00000132357
TCGA cBioPortalCARD6
AceView (NCBI)CARD6
Genatlas (Paris)CARD6
WikiGenes84674
SOURCE (Princeton)CARD6
Genetics Home Reference (NIH)CARD6
Genomic and cartography
GoldenPath hg38 (UCSC)CARD6  -     chr5:40841308-40855354 +  5p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CARD6  -     5p13.1   [Description]    (hg19-Feb_2009)
EnsemblCARD6 - 5p13.1 [CytoView hg19]  CARD6 - 5p13.1 [CytoView hg38]
Mapping of homologs : NCBICARD6 [Mapview hg19]  CARD6 [Mapview hg38]
OMIM609986   
Gene and transcription
Genbank (Entrez)AB209844 AF356193 AK304349 AY196783 BC093825
RefSeq transcript (Entrez)NM_032587
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CARD6
Cluster EST : UnigeneHs.200242 [ NCBI ]
CGAP (NCI)Hs.200242
Alternative Splicing GalleryENSG00000132357
Gene ExpressionCARD6 [ NCBI-GEO ]   CARD6 [ EBI - ARRAY_EXPRESS ]   CARD6 [ SEEK ]   CARD6 [ MEM ]
Gene Expression Viewer (FireBrowse)CARD6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84674
GTEX Portal (Tissue expression)CARD6
Human Protein AtlasENSG00000132357-CARD6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BX69   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BX69  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BX69
Splice isoforms : SwissVarQ9BX69
PhosPhoSitePlusQ9BX69
Domaine pattern : Prosite (Expaxy)CARD (PS50209)   
Domains : Interpro (EBI)CARD    DEATH-like_dom_sf   
Domain families : Pfam (Sanger)CARD (PF00619)   
Domain families : Pfam (NCBI)pfam00619   
Domain families : Smart (EMBL)CARD (SM00114)  
Conserved Domain (NCBI)CARD6
DMDM Disease mutations84674
Blocks (Seattle)CARD6
SuperfamilyQ9BX69
Human Protein Atlas [tissue]ENSG00000132357-CARD6 [tissue]
Peptide AtlasQ9BX69
HPRD09871
IPIIPI00306794   IPI00908584   IPI00428924   
Protein Interaction databases
DIP (DOE-UCLA)Q9BX69
IntAct (EBI)Q9BX69
FunCoupENSG00000132357
BioGRIDCARD6
STRING (EMBL)CARD6
ZODIACCARD6
Ontologies - Pathways
QuickGOQ9BX69
Ontology : AmiGOprotein binding  apoptotic process  regulation of apoptotic process  
Ontology : EGO-EBIprotein binding  apoptotic process  regulation of apoptotic process  
Pathways : KEGGNOD-like receptor signaling pathway   
NDEx NetworkCARD6
Atlas of Cancer Signalling NetworkCARD6
Wikipedia pathwaysCARD6
Orthology - Evolution
OrthoDB84674
GeneTree (enSembl)ENSG00000132357
Phylogenetic Trees/Animal Genes : TreeFamCARD6
HOVERGENQ9BX69
HOGENOMQ9BX69
Homologs : HomoloGeneCARD6
Homology/Alignments : Family Browser (UCSC)CARD6
Gene fusions - Rearrangements
Fusion : QuiverCARD6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCARD6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CARD6
dbVarCARD6
ClinVarCARD6
1000_GenomesCARD6 
Exome Variant ServerCARD6
ExAC (Exome Aggregation Consortium)ENSG00000132357
GNOMAD BrowserENSG00000132357
Varsome BrowserCARD6
Genetic variants : HAPMAP84674
Genomic Variants (DGV)CARD6 [DGVbeta]
DECIPHERCARD6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCARD6 
Mutations
ICGC Data PortalCARD6 
TCGA Data PortalCARD6 
Broad Tumor PortalCARD6
OASIS PortalCARD6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCARD6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCARD6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CARD6
DgiDB (Drug Gene Interaction Database)CARD6
DoCM (Curated mutations)CARD6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CARD6 (select a term)
intoGenCARD6
Cancer3DCARD6(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609986   
Orphanet
DisGeNETCARD6
MedgenCARD6
Genetic Testing Registry CARD6
NextProtQ9BX69 [Medical]
TSGene84674
GENETestsCARD6
Target ValidationCARD6
Huge Navigator CARD6 [HugePedia]
snp3D : Map Gene to Disease84674
BioCentury BCIQCARD6
ClinGenCARD6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84674
Chemical/Pharm GKB GenePA26076
Clinical trialCARD6
Miscellaneous
canSAR (ICR)CARD6 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCARD6
EVEXCARD6
GoPubMedCARD6
iHOPCARD6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 27 11:13:03 CEST 2018

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