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CARHSP1 (calcium regulated heat stable protein 1)

Identity

Alias_namescalcium regulated heat stable protein 1 (24kD)
calcium regulated heat stable protein 1, 24kDa
Alias_symbol (synonym)CRHSP-24
CSDC1
Other aliasCRHSP24
HGNC (Hugo) CARHSP1
LocusID (NCBI) 23589
Atlas_Id 61420
Location 16p13.2  [Link to chromosome band 16p13]
Location_base_pair Starts at 8852942 and ends at 8868401 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CARHSP1 (16p13.2) / CARHSP1 (16p13.2)CARHSP1 (16p13.2) / RAVER2 (1p31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CARHSP1   17150
Cards
Entrez_Gene (NCBI)CARHSP1  23589  calcium regulated heat stable protein 1
AliasesCRHSP-24; CRHSP24; CSDC1
GeneCards (Weizmann)CARHSP1
Ensembl hg19 (Hinxton)ENSG00000153048 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153048 [Gene_View]  chr16:8852942-8868401 [Contig_View]  CARHSP1 [Vega]
ICGC DataPortalENSG00000153048
TCGA cBioPortalCARHSP1
AceView (NCBI)CARHSP1
Genatlas (Paris)CARHSP1
WikiGenes23589
SOURCE (Princeton)CARHSP1
Genetics Home Reference (NIH)CARHSP1
Genomic and cartography
GoldenPath hg38 (UCSC)CARHSP1  -     chr16:8852942-8868401 -  16p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CARHSP1  -     16p13.2   [Description]    (hg19-Feb_2009)
EnsemblCARHSP1 - 16p13.2 [CytoView hg19]  CARHSP1 - 16p13.2 [CytoView hg38]
Mapping of homologs : NCBICARHSP1 [Mapview hg19]  CARHSP1 [Mapview hg38]
OMIM616885   
Gene and transcription
Genbank (Entrez)AF115345 AK093698 AK311777 BC000782 BC001333
RefSeq transcript (Entrez)NM_001042476 NM_001278260 NM_001278261 NM_001278262 NM_001278263 NM_001278264 NM_001278265 NM_001278266 NM_014316
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CARHSP1
Cluster EST : UnigeneHs.632184 [ NCBI ]
CGAP (NCI)Hs.632184
Alternative Splicing GalleryENSG00000153048
Gene ExpressionCARHSP1 [ NCBI-GEO ]   CARHSP1 [ EBI - ARRAY_EXPRESS ]   CARHSP1 [ SEEK ]   CARHSP1 [ MEM ]
Gene Expression Viewer (FireBrowse)CARHSP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23589
GTEX Portal (Tissue expression)CARHSP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2V2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2V2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2V2
Splice isoforms : SwissVarQ9Y2V2
PhosPhoSitePlusQ9Y2V2
Domaine pattern : Prosite (Expaxy)COLD_SHOCK (PS00352)   
Domains : Interpro (EBI)Cold-shock_CS    CSD    CSP_DNA-bd    NA-bd_OB-fold   
Domain families : Pfam (Sanger)CSD (PF00313)   
Domain families : Pfam (NCBI)pfam00313   
Domain families : Smart (EMBL)CSP (SM00357)  
Conserved Domain (NCBI)CARHSP1
DMDM Disease mutations23589
Blocks (Seattle)CARHSP1
PDB (SRS)3AQQ   
PDB (PDBSum)3AQQ   
PDB (IMB)3AQQ   
PDB (RSDB)3AQQ   
Structural Biology KnowledgeBase3AQQ   
SCOP (Structural Classification of Proteins)3AQQ   
CATH (Classification of proteins structures)3AQQ   
SuperfamilyQ9Y2V2
Human Protein AtlasENSG00000153048
Peptide AtlasQ9Y2V2
HPRD08515
IPIIPI00304409   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2V2
IntAct (EBI)Q9Y2V2
FunCoupENSG00000153048
BioGRIDCARHSP1
STRING (EMBL)CARHSP1
ZODIACCARHSP1
Ontologies - Pathways
QuickGOQ9Y2V2
Ontology : AmiGOcytoplasmic exosome (RNase complex)  P-body  DNA binding  mRNA 3'-UTR binding  protein binding  cytoplasm  cytosol  regulation of transcription, DNA-templated  phosphatase binding  intracellular signal transduction  P granule  regulation of mRNA stability  regulation of mRNA stability  extracellular exosome  
Ontology : EGO-EBIcytoplasmic exosome (RNase complex)  P-body  DNA binding  mRNA 3'-UTR binding  protein binding  cytoplasm  cytosol  regulation of transcription, DNA-templated  phosphatase binding  intracellular signal transduction  P granule  regulation of mRNA stability  regulation of mRNA stability  extracellular exosome  
NDEx NetworkCARHSP1
Atlas of Cancer Signalling NetworkCARHSP1
Wikipedia pathwaysCARHSP1
Orthology - Evolution
OrthoDB23589
GeneTree (enSembl)ENSG00000153048
Phylogenetic Trees/Animal Genes : TreeFamCARHSP1
HOVERGENQ9Y2V2
HOGENOMQ9Y2V2
Homologs : HomoloGeneCARHSP1
Homology/Alignments : Family Browser (UCSC)CARHSP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCARHSP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CARHSP1
dbVarCARHSP1
ClinVarCARHSP1
1000_GenomesCARHSP1 
Exome Variant ServerCARHSP1
ExAC (Exome Aggregation Consortium)CARHSP1 (select the gene name)
Genetic variants : HAPMAP23589
Genomic Variants (DGV)CARHSP1 [DGVbeta]
DECIPHERCARHSP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCARHSP1 
Mutations
ICGC Data PortalCARHSP1 
TCGA Data PortalCARHSP1 
Broad Tumor PortalCARHSP1
OASIS PortalCARHSP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCARHSP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCARHSP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CARHSP1
DgiDB (Drug Gene Interaction Database)CARHSP1
DoCM (Curated mutations)CARHSP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CARHSP1 (select a term)
intoGenCARHSP1
Cancer3DCARHSP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616885   
Orphanet
MedgenCARHSP1
Genetic Testing Registry CARHSP1
NextProtQ9Y2V2 [Medical]
TSGene23589
GENETestsCARHSP1
Target ValidationCARHSP1
Huge Navigator CARHSP1 [HugePedia]
snp3D : Map Gene to Disease23589
BioCentury BCIQCARHSP1
ClinGenCARHSP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23589
Chemical/Pharm GKB GenePA38440
Clinical trialCARHSP1
Miscellaneous
canSAR (ICR)CARHSP1 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCARHSP1
EVEXCARHSP1
GoPubMedCARHSP1
iHOPCARHSP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:52 CEST 2017

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