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CARKD (carbohydrate kinase domain containing)

Identity

Other aliasLP3298
HGNC (Hugo) CARKD
LocusID (NCBI) 55739
Atlas_Id 61421
Location 13q34  [Link to chromosome band 13q34]
Location_base_pair Starts at 111267931 and ends at 111292342 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CARKD (13q34) / CREBBP (16p13.3)CARKD (13q34) / STT3A (11q24.2)DNAH14 (1q42.12) / CARKD (13q34)
USP34 (2p15) / CARKD (13q34)ZC3H7B (22q13.2) / CARKD (13q34)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CARKD   25576
Cards
Entrez_Gene (NCBI)CARKD  55739  carbohydrate kinase domain containing
AliasesLP3298
GeneCards (Weizmann)CARKD
Ensembl hg19 (Hinxton)ENSG00000213995 [Gene_View]  chr13:111267931-111292342 [Contig_View]  CARKD [Vega]
Ensembl hg38 (Hinxton)ENSG00000213995 [Gene_View]  chr13:111267931-111292342 [Contig_View]  CARKD [Vega]
ICGC DataPortalENSG00000213995
TCGA cBioPortalCARKD
AceView (NCBI)CARKD
Genatlas (Paris)CARKD
WikiGenes55739
SOURCE (Princeton)CARKD
Genetics Home Reference (NIH)CARKD
Genomic and cartography
GoldenPath hg19 (UCSC)CARKD  -     chr13:111267931-111292342 +  13q34   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CARKD  -     13q34   [Description]    (hg38-Dec_2013)
EnsemblCARKD - 13q34 [CytoView hg19]  CARKD - 13q34 [CytoView hg38]
Mapping of homologs : NCBICARKD [Mapview hg19]  CARKD [Mapview hg38]
OMIM615910   
Gene and transcription
Genbank (Entrez)AF091088 AF151071 AK001631 AK024260 AK057767
RefSeq transcript (Entrez)NM_001242881 NM_001242882 NM_001242883 NM_018210
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_009952 NW_004929389
Consensus coding sequences : CCDS (NCBI)CARKD
Cluster EST : UnigeneHs.408324 [ NCBI ]
CGAP (NCI)Hs.408324
Alternative Splicing GalleryENSG00000213995
Gene ExpressionCARKD [ NCBI-GEO ]   CARKD [ EBI - ARRAY_EXPRESS ]   CARKD [ SEEK ]   CARKD [ MEM ]
Gene Expression Viewer (FireBrowse)CARKD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55739
GTEX Portal (Tissue expression)CARKD
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IW45   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IW45  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IW45
Splice isoforms : SwissVarQ8IW45
PhosPhoSitePlusQ8IW45
Domaine pattern : Prosite (Expaxy)YJEF_C_3 (PS51383)   
Domains : Interpro (EBI)CARKD    Ribokinase-like   
Domain families : Pfam (Sanger)Carb_kinase (PF01256)   
Domain families : Pfam (NCBI)pfam01256   
Conserved Domain (NCBI)CARKD
DMDM Disease mutations55739
Blocks (Seattle)CARKD
SuperfamilyQ8IW45
Human Protein AtlasENSG00000213995
Peptide AtlasQ8IW45
HPRD07698
IPIIPI00873027   IPI00645172   IPI00908636   IPI00910136   IPI00909495   IPI00922893   IPI00867692   IPI00000892   IPI00985473   
Protein Interaction databases
DIP (DOE-UCLA)Q8IW45
IntAct (EBI)Q8IW45
FunCoupENSG00000213995
BioGRIDCARKD
STRING (EMBL)CARKD
ZODIACCARKD
Ontologies - Pathways
QuickGOQ8IW45
Ontology : AmiGOmolecular_function  protein binding  ATP binding  cellular_component  mitochondrion  biological_process  nicotinamide nucleotide metabolic process  ATP-dependent NAD(P)H-hydrate dehydratase activity  ADP-dependent NAD(P)H-hydrate dehydratase activity  
Ontology : EGO-EBImolecular_function  protein binding  ATP binding  cellular_component  mitochondrion  biological_process  nicotinamide nucleotide metabolic process  ATP-dependent NAD(P)H-hydrate dehydratase activity  ADP-dependent NAD(P)H-hydrate dehydratase activity  
NDEx NetworkCARKD
Atlas of Cancer Signalling NetworkCARKD
Wikipedia pathwaysCARKD
Orthology - Evolution
OrthoDB55739
GeneTree (enSembl)ENSG00000213995
Phylogenetic Trees/Animal Genes : TreeFamCARKD
HOVERGENQ8IW45
HOGENOMQ8IW45
Homologs : HomoloGeneCARKD
Homology/Alignments : Family Browser (UCSC)CARKD
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCARKD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CARKD
dbVarCARKD
ClinVarCARKD
1000_GenomesCARKD 
Exome Variant ServerCARKD
ExAC (Exome Aggregation Consortium)CARKD (select the gene name)
Genetic variants : HAPMAP55739
Genomic Variants (DGV)CARKD [DGVbeta]
DECIPHER (Syndromes)13:111267931-111292342  ENSG00000213995
CONAN: Copy Number AnalysisCARKD 
Mutations
ICGC Data PortalCARKD 
TCGA Data PortalCARKD 
Broad Tumor PortalCARKD
OASIS PortalCARKD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCARKD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCARKD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CARKD
DgiDB (Drug Gene Interaction Database)CARKD
DoCM (Curated mutations)CARKD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CARKD (select a term)
intoGenCARKD
Cancer3DCARKD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615910   
Orphanet
MedgenCARKD
Genetic Testing Registry CARKD
NextProtQ8IW45 [Medical]
TSGene55739
GENETestsCARKD
Huge Navigator CARKD [HugePedia]
snp3D : Map Gene to Disease55739
BioCentury BCIQCARKD
ClinGenCARKD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55739
Chemical/Pharm GKB GenePA164717652
Clinical trialCARKD
Miscellaneous
canSAR (ICR)CARKD (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCARKD
EVEXCARKD
GoPubMedCARKD
iHOPCARKD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:58:07 CET 2017

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