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CARMIL3 (capping protein regulator and myosin 1 linker 3)

Identity

Alias_namesC14orf121
LRRC16B
chromosome 14 open reading frame 121
leucine rich repeat containing 16B
Alias_symbol (synonym)BC008134
crml-1
Other alias
HGNC (Hugo) CARMIL3
LocusID (NCBI) 90668
Atlas_Id 78488
Location 14q11.2  [Link to chromosome band 14q11]
Location_base_pair Starts at 24051997 and ends at 24069728 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CARMIL3   20272
Cards
Entrez_Gene (NCBI)CARMIL3  90668  capping protein regulator and myosin 1 linker 3
AliasesC14orf121; LRRC16B; crml-1
GeneCards (Weizmann)CARMIL3
Ensembl hg19 (Hinxton)ENSG00000186648 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186648 [Gene_View]  chr14:24051997-24069728 [Contig_View]  CARMIL3 [Vega]
ICGC DataPortalENSG00000186648
TCGA cBioPortalCARMIL3
AceView (NCBI)CARMIL3
Genatlas (Paris)CARMIL3
WikiGenes90668
SOURCE (Princeton)CARMIL3
Genetics Home Reference (NIH)CARMIL3
Genomic and cartography
GoldenPath hg38 (UCSC)CARMIL3  -     chr14:24051997-24069728 +  14q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CARMIL3  -     14q11.2   [Description]    (hg19-Feb_2009)
EnsemblCARMIL3 - 14q11.2 [CytoView hg19]  CARMIL3 - 14q11.2 [CytoView hg38]
Mapping of homologs : NCBICARMIL3 [Mapview hg19]  CARMIL3 [Mapview hg38]
OMIM614716   
Gene and transcription
Genbank (Entrez)AI017934 AI631690 AK074167 AL834197 BC008134
RefSeq transcript (Entrez)NM_138360
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CARMIL3
Cluster EST : UnigeneHs.26135 [ NCBI ]
CGAP (NCI)Hs.26135
Alternative Splicing GalleryENSG00000186648
Gene ExpressionCARMIL3 [ NCBI-GEO ]   CARMIL3 [ EBI - ARRAY_EXPRESS ]   CARMIL3 [ SEEK ]   CARMIL3 [ MEM ]
Gene Expression Viewer (FireBrowse)CARMIL3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90668
GTEX Portal (Tissue expression)CARMIL3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8ND23   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8ND23  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8ND23
Splice isoforms : SwissVarQ8ND23
PhosPhoSitePlusQ8ND23
Domains : Interpro (EBI)CARMIL_C    L_dom-like    Leu-rich_rpt    LRRC16B   
Domain families : Pfam (Sanger)CARMIL_C (PF16000)    LRR_6 (PF13516)   
Domain families : Pfam (NCBI)pfam16000    pfam13516   
Conserved Domain (NCBI)CARMIL3
DMDM Disease mutations90668
Blocks (Seattle)CARMIL3
SuperfamilyQ8ND23
Human Protein AtlasENSG00000186648
Peptide AtlasQ8ND23
HPRD11278
IPIIPI00301676   IPI00749462   IPI00886998   
Protein Interaction databases
DIP (DOE-UCLA)Q8ND23
IntAct (EBI)Q8ND23
FunCoupENSG00000186648
BioGRIDCARMIL3
STRING (EMBL)CARMIL3
ZODIACCARMIL3
Ontologies - Pathways
QuickGOQ8ND23
Ontology : AmiGOcytoplasm  plasma membrane  
Ontology : EGO-EBIcytoplasm  plasma membrane  
NDEx NetworkCARMIL3
Atlas of Cancer Signalling NetworkCARMIL3
Wikipedia pathwaysCARMIL3
Orthology - Evolution
OrthoDB90668
GeneTree (enSembl)ENSG00000186648
Phylogenetic Trees/Animal Genes : TreeFamCARMIL3
HOVERGENQ8ND23
HOGENOMQ8ND23
Homologs : HomoloGeneCARMIL3
Homology/Alignments : Family Browser (UCSC)CARMIL3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCARMIL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CARMIL3
dbVarCARMIL3
ClinVarCARMIL3
1000_GenomesCARMIL3 
Exome Variant ServerCARMIL3
ExAC (Exome Aggregation Consortium)CARMIL3 (select the gene name)
Genetic variants : HAPMAP90668
Genomic Variants (DGV)CARMIL3 [DGVbeta]
DECIPHERCARMIL3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCARMIL3 
Mutations
ICGC Data PortalCARMIL3 
TCGA Data PortalCARMIL3 
Broad Tumor PortalCARMIL3
OASIS PortalCARMIL3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCARMIL3
BioMutasearch CARMIL3
DgiDB (Drug Gene Interaction Database)CARMIL3
DoCM (Curated mutations)CARMIL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CARMIL3 (select a term)
intoGenCARMIL3
Cancer3DCARMIL3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614716   
Orphanet
MedgenCARMIL3
Genetic Testing Registry CARMIL3
NextProtQ8ND23 [Medical]
TSGene90668
GENETestsCARMIL3
Huge Navigator CARMIL3 [HugePedia]
snp3D : Map Gene to Disease90668
BioCentury BCIQCARMIL3
ClinGenCARMIL3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90668
Chemical/Pharm GKB GenePA162394445
Clinical trialCARMIL3
Miscellaneous
canSAR (ICR)CARMIL3 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCARMIL3
EVEXCARMIL3
GoPubMedCARMIL3
iHOPCARMIL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:04:22 CEST 2017

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