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CARMN (cardiac mesoderm enhancer-associated non-coding RNA)

Identity

Alias_namesMIR143HG
MIR143 host gene (non-protein coding)
MIR143 host gene
Alias_symbol (synonym)CARMEN
Other alias
HGNC (Hugo) CARMN
LocusID (NCBI) 728264
Atlas_Id 77813
Location 5q32  [Link to chromosome band 5q32]
Location_base_pair Starts at 149406845 and ends at 149432836 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CARMN (5q32) / ITGB1BP1 (2p25.1)CARMN (5q32) / ST8SIA1 (12p12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CARMN   42872
Cards
Entrez_Gene (NCBI)CARMN  728264  cardiac mesoderm enhancer-associated non-coding RNA
AliasesCARMEN; MIR143HG
GeneCards (Weizmann)CARMN
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:149406845-149432836 [Contig_View]  CARMN [Vega]
TCGA cBioPortalCARMN
AceView (NCBI)CARMN
Genatlas (Paris)CARMN
WikiGenes728264
SOURCE (Princeton)CARMN
Genetics Home Reference (NIH)CARMN
Genomic and cartography
GoldenPath hg38 (UCSC)CARMN  -     chr5:149406845-149432836 +  5q32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CARMN  -     5q32   [Description]    (hg19-Feb_2009)
EnsemblCARMN - 5q32 [CytoView hg19]  CARMN - 5q32 [CytoView hg38]
Mapping of homologs : NCBICARMN [Mapview hg19]  CARMN [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI674543 AK093957 AK124798 AK126481 AK126541
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CARMN
Cluster EST : UnigeneHs.744892 [ NCBI ]
CGAP (NCI)Hs.744892
Gene ExpressionCARMN [ NCBI-GEO ]   CARMN [ EBI - ARRAY_EXPRESS ]   CARMN [ SEEK ]   CARMN [ MEM ]
Gene Expression Viewer (FireBrowse)CARMN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)728264
GTEX Portal (Tissue expression)CARMN
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CARMN
DMDM Disease mutations728264
Blocks (Seattle)CARMN
IPIIPI00847983   
Protein Interaction databases
BioGRIDCARMN
STRING (EMBL)CARMN
ZODIACCARMN
Ontologies - Pathways
Huge Navigator CARMN [HugePedia]
snp3D : Map Gene to Disease728264
BioCentury BCIQCARMN
ClinGenCARMN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728264
Clinical trialCARMN
Miscellaneous
canSAR (ICR)CARMN (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCARMN
EVEXCARMN
GoPubMedCARMN
iHOPCARMN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:11:30 CET 2017

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