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CARNMT1 (carnosine N-methyltransferase 1)

Identity

Alias (NCBI)C9orf41
UPF0586
HGNC (Hugo) CARNMT1
HGNC Alias symbFLJ25795
HGNC Previous nameC9orf41
HGNC Previous namechromosome 9 open reading frame 41
LocusID (NCBI) 138199
Atlas_Id 77800
Location 9q21.13  [Link to chromosome band 9q21]
Location_base_pair Starts at 74980794 and ends at 75028430 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CARNMT1   23435
Cards
Entrez_Gene (NCBI)CARNMT1  138199  carnosine N-methyltransferase 1
AliasesC9orf41; UPF0586
GeneCards (Weizmann)CARNMT1
Ensembl hg19 (Hinxton)ENSG00000156017 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000156017 [Gene_View]  ENSG00000156017 [Sequence]  chr9:74980794-75028430 [Contig_View]  CARNMT1 [Vega]
ICGC DataPortalENSG00000156017
TCGA cBioPortalCARNMT1
AceView (NCBI)CARNMT1
Genatlas (Paris)CARNMT1
WikiGenes138199
SOURCE (Princeton)CARNMT1
Genetics Home Reference (NIH)CARNMT1
Genomic and cartography
GoldenPath hg38 (UCSC)CARNMT1  -     chr9:74980794-75028430 -  9q21.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CARNMT1  -     9q21.13   [Description]    (hg19-Feb_2009)
GoldenPathCARNMT1 - 9q21.13 [CytoView hg19]  CARNMT1 - 9q21.13 [CytoView hg38]
ImmunoBaseENSG00000156017
genome Data Viewer NCBICARNMT1 [Mapview hg19]  
OMIM616552   
Gene and transcription
Genbank (Entrez)AK098661 AK299691 BC034033 BI560441 BM145242
RefSeq transcript (Entrez)NM_001320497 NM_152420
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CARNMT1
Alternative Splicing GalleryENSG00000156017
Gene ExpressionCARNMT1 [ NCBI-GEO ]   CARNMT1 [ EBI - ARRAY_EXPRESS ]   CARNMT1 [ SEEK ]   CARNMT1 [ MEM ]
Gene Expression Viewer (FireBrowse)CARNMT1 [ Firebrowse - Broad ]
GenevisibleExpression of CARNMT1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)138199
GTEX Portal (Tissue expression)CARNMT1
Human Protein AtlasENSG00000156017-CARNMT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N4J0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N4J0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N4J0
Splice isoforms : SwissVarQ8N4J0
PhosPhoSitePlusQ8N4J0
Domains : Interpro (EBI)N2227    SAM-dependent_MTases   
Domain families : Pfam (Sanger)N2227 (PF07942)   
Domain families : Pfam (NCBI)pfam07942   
Domain families : Smart (EMBL)N2227 (SM01296)  
Conserved Domain (NCBI)CARNMT1
DMDM Disease mutations138199
Blocks (Seattle)CARNMT1
PDB (RSDB)5YF0    5YF1    5YF2   
PDB Europe5YF0    5YF1    5YF2   
PDB (PDBSum)5YF0    5YF1    5YF2   
PDB (IMB)5YF0    5YF1    5YF2   
Structural Biology KnowledgeBase5YF0    5YF1    5YF2   
SCOP (Structural Classification of Proteins)5YF0    5YF1    5YF2   
CATH (Classification of proteins structures)5YF0    5YF1    5YF2   
SuperfamilyQ8N4J0
Human Protein Atlas [tissue]ENSG00000156017-CARNMT1 [tissue]
Peptide AtlasQ8N4J0
HPRD12958
IPIIPI00175028   IPI01009171   IPI00514721   IPI00515112   
Protein Interaction databases
DIP (DOE-UCLA)Q8N4J0
IntAct (EBI)Q8N4J0
FunCoupENSG00000156017
BioGRIDCARNMT1
STRING (EMBL)CARNMT1
ZODIACCARNMT1
Ontologies - Pathways
QuickGOQ8N4J0
Ontology : AmiGOnucleus  nucleus  cytosol  cytosol  cytosol  histidine catabolic process  S-adenosylmethionine-dependent methyltransferase activity  carnosine N-methyltransferase activity  carnosine N-methyltransferase activity  carnosine N-methyltransferase activity  methylation  carnosine metabolic process  carnosine metabolic process  
Ontology : EGO-EBInucleus  nucleus  cytosol  cytosol  cytosol  histidine catabolic process  S-adenosylmethionine-dependent methyltransferase activity  carnosine N-methyltransferase activity  carnosine N-methyltransferase activity  carnosine N-methyltransferase activity  methylation  carnosine metabolic process  carnosine metabolic process  
NDEx NetworkCARNMT1
Atlas of Cancer Signalling NetworkCARNMT1
Wikipedia pathwaysCARNMT1
Orthology - Evolution
OrthoDB138199
GeneTree (enSembl)ENSG00000156017
Phylogenetic Trees/Animal Genes : TreeFamCARNMT1
HOGENOMQ8N4J0
Homologs : HomoloGeneCARNMT1
Homology/Alignments : Family Browser (UCSC)CARNMT1
Gene fusions - Rearrangements
Fusion : QuiverCARNMT1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCARNMT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CARNMT1
dbVarCARNMT1
ClinVarCARNMT1
1000_GenomesCARNMT1 
Exome Variant ServerCARNMT1
GNOMAD BrowserENSG00000156017
Varsome BrowserCARNMT1
Genetic variants : HAPMAP138199
Genomic Variants (DGV)CARNMT1 [DGVbeta]
DECIPHERCARNMT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCARNMT1 
Mutations
ICGC Data PortalCARNMT1 
TCGA Data PortalCARNMT1 
Broad Tumor PortalCARNMT1
OASIS PortalCARNMT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCARNMT1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCARNMT1
Mutations and Diseases : HGMDCARNMT1
BioMutasearch CARNMT1
DgiDB (Drug Gene Interaction Database)CARNMT1
DoCM (Curated mutations)CARNMT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CARNMT1 (select a term)
intoGenCARNMT1
Cancer3DCARNMT1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616552   
Orphanet
DisGeNETCARNMT1
MedgenCARNMT1
Genetic Testing Registry CARNMT1
NextProtQ8N4J0 [Medical]
TSGene138199
GENETestsCARNMT1
Target ValidationCARNMT1
Huge Navigator CARNMT1 [HugePedia]
snp3D : Map Gene to Disease138199
BioCentury BCIQCARNMT1
ClinGenCARNMT1
Clinical trials, drugs, therapy
Protein Interactions : CTD138199
Pharm GKB GenePA134929393
Clinical trialCARNMT1
Miscellaneous
canSAR (ICR)CARNMT1 (select the gene name)
HarmonizomeCARNMT1
DataMed IndexCARNMT1
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCARNMT1
EVEXCARNMT1
GoPubMedCARNMT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Sat Aug 22 19:07:45 CEST 2020

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