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CARNMT1 (carnosine N-methyltransferase 1)

Identity

Alias_namesC9orf41
chromosome 9 open reading frame 41
Alias_symbol (synonym)FLJ25795
Other aliasUPF0586
HGNC (Hugo) CARNMT1
LocusID (NCBI) 138199
Atlas_Id 77800
Location 9q21.13  [Link to chromosome band 9q21]
Location_base_pair Starts at 74980794 and ends at 75027151 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CARNMT1   23435
Cards
Entrez_Gene (NCBI)CARNMT1  138199  carnosine N-methyltransferase 1
AliasesC9orf41; UPF0586
GeneCards (Weizmann)CARNMT1
Ensembl hg19 (Hinxton)ENSG00000156017 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000156017 [Gene_View]  chr9:74980794-75027151 [Contig_View]  CARNMT1 [Vega]
ICGC DataPortalENSG00000156017
TCGA cBioPortalCARNMT1
AceView (NCBI)CARNMT1
Genatlas (Paris)CARNMT1
WikiGenes138199
SOURCE (Princeton)CARNMT1
Genetics Home Reference (NIH)CARNMT1
Genomic and cartography
GoldenPath hg38 (UCSC)CARNMT1  -     chr9:74980794-75027151 -  9q21.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CARNMT1  -     9q21.13   [Description]    (hg19-Feb_2009)
EnsemblCARNMT1 - 9q21.13 [CytoView hg19]  CARNMT1 - 9q21.13 [CytoView hg38]
Mapping of homologs : NCBICARNMT1 [Mapview hg19]  CARNMT1 [Mapview hg38]
OMIM616552   
Gene and transcription
Genbank (Entrez)AK098661 AK299691 BC034033 BI560441 BM145242
RefSeq transcript (Entrez)NM_001320497 NM_152420
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CARNMT1
Cluster EST : UnigeneHs.567688 [ NCBI ]
CGAP (NCI)Hs.567688
Alternative Splicing GalleryENSG00000156017
Gene ExpressionCARNMT1 [ NCBI-GEO ]   CARNMT1 [ EBI - ARRAY_EXPRESS ]   CARNMT1 [ SEEK ]   CARNMT1 [ MEM ]
Gene Expression Viewer (FireBrowse)CARNMT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)138199
GTEX Portal (Tissue expression)CARNMT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N4J0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N4J0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N4J0
Splice isoforms : SwissVarQ8N4J0
PhosPhoSitePlusQ8N4J0
Domains : Interpro (EBI)N2227    SAM-dependent_MTases   
Domain families : Pfam (Sanger)N2227 (PF07942)   
Domain families : Pfam (NCBI)pfam07942   
Domain families : Smart (EMBL)N2227 (SM01296)  
Conserved Domain (NCBI)CARNMT1
DMDM Disease mutations138199
Blocks (Seattle)CARNMT1
SuperfamilyQ8N4J0
Human Protein AtlasENSG00000156017
Peptide AtlasQ8N4J0
HPRD12958
IPIIPI00175028   IPI01009171   IPI00514721   IPI00515112   
Protein Interaction databases
DIP (DOE-UCLA)Q8N4J0
IntAct (EBI)Q8N4J0
FunCoupENSG00000156017
BioGRIDCARNMT1
STRING (EMBL)CARNMT1
ZODIACCARNMT1
Ontologies - Pathways
QuickGOQ8N4J0
Ontology : AmiGOnucleus  cytosol  cytosol  histidine catabolic process  carnosine N-methyltransferase activity  carnosine N-methyltransferase activity  methylation  carnosine metabolic process  
Ontology : EGO-EBInucleus  cytosol  cytosol  histidine catabolic process  carnosine N-methyltransferase activity  carnosine N-methyltransferase activity  methylation  carnosine metabolic process  
NDEx NetworkCARNMT1
Atlas of Cancer Signalling NetworkCARNMT1
Wikipedia pathwaysCARNMT1
Orthology - Evolution
OrthoDB138199
GeneTree (enSembl)ENSG00000156017
Phylogenetic Trees/Animal Genes : TreeFamCARNMT1
HOVERGENQ8N4J0
HOGENOMQ8N4J0
Homologs : HomoloGeneCARNMT1
Homology/Alignments : Family Browser (UCSC)CARNMT1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCARNMT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CARNMT1
dbVarCARNMT1
ClinVarCARNMT1
1000_GenomesCARNMT1 
Exome Variant ServerCARNMT1
ExAC (Exome Aggregation Consortium)CARNMT1 (select the gene name)
Genetic variants : HAPMAP138199
Genomic Variants (DGV)CARNMT1 [DGVbeta]
DECIPHERCARNMT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCARNMT1 
Mutations
ICGC Data PortalCARNMT1 
TCGA Data PortalCARNMT1 
Broad Tumor PortalCARNMT1
OASIS PortalCARNMT1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCARNMT1
BioMutasearch CARNMT1
DgiDB (Drug Gene Interaction Database)CARNMT1
DoCM (Curated mutations)CARNMT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CARNMT1 (select a term)
intoGenCARNMT1
Cancer3DCARNMT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616552   
Orphanet
MedgenCARNMT1
Genetic Testing Registry CARNMT1
NextProtQ8N4J0 [Medical]
TSGene138199
GENETestsCARNMT1
Target ValidationCARNMT1
Huge Navigator CARNMT1 [HugePedia]
snp3D : Map Gene to Disease138199
BioCentury BCIQCARNMT1
ClinGenCARNMT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD138199
Chemical/Pharm GKB GenePA134929393
Clinical trialCARNMT1
Miscellaneous
canSAR (ICR)CARNMT1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCARNMT1
EVEXCARNMT1
GoPubMedCARNMT1
iHOPCARNMT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:53 CEST 2017

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