Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CARNMT1 (carnosine N-methyltransferase 1)

Identity

Alias_namesC9orf41
chromosome 9 open reading frame 41
Alias_symbol (synonym)FLJ25795
Other alias
HGNC (Hugo) CARNMT1
LocusID (NCBI) 138199
Atlas_Id 77800
Location 9q21.13  [Link to chromosome band 9q21]
Location_base_pair Starts at 77597873 and ends at 77643310 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CARNMT1   23435
Cards
Entrez_Gene (NCBI)CARNMT1  138199  carnosine N-methyltransferase 1
AliasesC9orf41
GeneCards (Weizmann)CARNMT1
Ensembl hg19 (Hinxton)ENSG00000156017 [Gene_View]  chr9:77597873-77643310 [Contig_View]  CARNMT1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000156017 [Gene_View]  chr9:77597873-77643310 [Contig_View]  CARNMT1 [Vega]
ICGC DataPortalENSG00000156017
TCGA cBioPortalCARNMT1
AceView (NCBI)CARNMT1
Genatlas (Paris)CARNMT1
WikiGenes138199
SOURCE (Princeton)CARNMT1
Genetics Home Reference (NIH)CARNMT1
Genomic and cartography
GoldenPath hg19 (UCSC)CARNMT1  -     chr9:77597873-77643310 -  9q21.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CARNMT1  -     9q21.13   [Description]    (hg38-Dec_2013)
EnsemblCARNMT1 - 9q21.13 [CytoView hg19]  CARNMT1 - 9q21.13 [CytoView hg38]
Mapping of homologs : NCBICARNMT1 [Mapview hg19]  CARNMT1 [Mapview hg38]
OMIM616552   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_152420
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)CARNMT1
Cluster EST : UnigeneHs.567688 [ NCBI ]
CGAP (NCI)Hs.567688
Alternative Splicing GalleryENSG00000156017
Gene ExpressionCARNMT1 [ NCBI-GEO ]   CARNMT1 [ EBI - ARRAY_EXPRESS ]   CARNMT1 [ SEEK ]   CARNMT1 [ MEM ]
Gene Expression Viewer (FireBrowse)CARNMT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)138199
GTEX Portal (Tissue expression)CARNMT1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CARNMT1
DMDM Disease mutations138199
Blocks (Seattle)CARNMT1
Human Protein AtlasENSG00000156017
HPRD12958
IPIIPI00175028   IPI01009171   IPI00514721   IPI00515112   
Protein Interaction databases
FunCoupENSG00000156017
BioGRIDCARNMT1
STRING (EMBL)CARNMT1
ZODIACCARNMT1
Ontologies - Pathways
Huge Navigator CARNMT1 [HugePedia]
snp3D : Map Gene to Disease138199
BioCentury BCIQCARNMT1
ClinGenCARNMT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD138199
Chemical/Pharm GKB GenePA134929393
Clinical trialCARNMT1
Miscellaneous
canSAR (ICR)CARNMT1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCARNMT1
EVEXCARNMT1
GoPubMedCARNMT1
iHOPCARNMT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:58:08 CET 2017

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