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CASC10 (cancer susceptibility 10)

Identity

Alias_namesC10orf114
chromosome 10 open reading frame 114
Alias_symbol (synonym)bA418C1.3
Other alias
HGNC (Hugo) CASC10
LocusID (NCBI) 399726
Atlas_Id 53476
Location 10p12.31  [Link to chromosome band 10p12]
Location_base_pair Starts at 21494492 and ends at 21497284 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CASC10   31448
Cards
Entrez_Gene (NCBI)CASC10  399726  cancer susceptibility 10
AliasesC10orf114; bA418C1.3
GeneCards (Weizmann)CASC10
Ensembl hg19 (Hinxton)ENSG00000204682 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204682 [Gene_View]  chr10:21494492-21497284 [Contig_View]  CASC10 [Vega]
ICGC DataPortalENSG00000204682
TCGA cBioPortalCASC10
AceView (NCBI)CASC10
Genatlas (Paris)CASC10
WikiGenes399726
SOURCE (Princeton)CASC10
Genetics Home Reference (NIH)CASC10
Genomic and cartography
GoldenPath hg38 (UCSC)CASC10  -     chr10:21494492-21497284 -  10p12.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CASC10  -     10p12.31   [Description]    (hg19-Feb_2009)
EnsemblCASC10 - 10p12.31 [CytoView hg19]  CASC10 - 10p12.31 [CytoView hg38]
Mapping of homologs : NCBICASC10 [Mapview hg19]  CASC10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC040880 BC130594 BC132974 DA401077
RefSeq transcript (Entrez)NM_001010911
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CASC10
Cluster EST : UnigeneHs.315568 [ NCBI ]
CGAP (NCI)Hs.315568
Alternative Splicing GalleryENSG00000204682
Gene ExpressionCASC10 [ NCBI-GEO ]   CASC10 [ EBI - ARRAY_EXPRESS ]   CASC10 [ SEEK ]   CASC10 [ MEM ]
Gene Expression Viewer (FireBrowse)CASC10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)399726
GTEX Portal (Tissue expression)CASC10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T4H9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T4H9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T4H9
Splice isoforms : SwissVarQ5T4H9
PhosPhoSitePlusQ5T4H9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CASC10
DMDM Disease mutations399726
Blocks (Seattle)CASC10
SuperfamilyQ5T4H9
Human Protein AtlasENSG00000204682
Peptide AtlasQ5T4H9
HPRD16574
IPIIPI00401306   
Protein Interaction databases
DIP (DOE-UCLA)Q5T4H9
IntAct (EBI)Q5T4H9
FunCoupENSG00000204682
BioGRIDCASC10
STRING (EMBL)CASC10
ZODIACCASC10
Ontologies - Pathways
QuickGOQ5T4H9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCASC10
Atlas of Cancer Signalling NetworkCASC10
Wikipedia pathwaysCASC10
Orthology - Evolution
OrthoDB399726
GeneTree (enSembl)ENSG00000204682
Phylogenetic Trees/Animal Genes : TreeFamCASC10
HOVERGENQ5T4H9
HOGENOMQ5T4H9
Homologs : HomoloGeneCASC10
Homology/Alignments : Family Browser (UCSC)CASC10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCASC10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CASC10
dbVarCASC10
ClinVarCASC10
1000_GenomesCASC10 
Exome Variant ServerCASC10
ExAC (Exome Aggregation Consortium)CASC10 (select the gene name)
Genetic variants : HAPMAP399726
Genomic Variants (DGV)CASC10 [DGVbeta]
DECIPHERCASC10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCASC10 
Mutations
ICGC Data PortalCASC10 
TCGA Data PortalCASC10 
Broad Tumor PortalCASC10
OASIS PortalCASC10 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCASC10
BioMutasearch CASC10
DgiDB (Drug Gene Interaction Database)CASC10
DoCM (Curated mutations)CASC10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CASC10 (select a term)
intoGenCASC10
Cancer3DCASC10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCASC10
Genetic Testing Registry CASC10
NextProtQ5T4H9 [Medical]
TSGene399726
GENETestsCASC10
Target ValidationCASC10
Huge Navigator CASC10 [HugePedia]
snp3D : Map Gene to Disease399726
BioCentury BCIQCASC10
ClinGenCASC10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD399726
Chemical/Pharm GKB GenePA134922846
Clinical trialCASC10
Miscellaneous
canSAR (ICR)CASC10 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCASC10
EVEXCASC10
GoPubMedCASC10
iHOPCASC10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:56:48 CEST 2017

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