Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CASC11 (cancer susceptibility 11 (non-protein coding))

Identity

Alias_symbol (synonym)TCONS_00014535
LINC00990
CARLo-7
Other alias
HGNC (Hugo) CASC11
LocusID (NCBI) 100270680
Atlas_Id 53484
Location 8q24.21  [Link to chromosome band 8q24]
Location_base_pair Starts at 127730194 and ends at 127733967 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CASC11   48939
Cards
Entrez_Gene (NCBI)CASC11  100270680  cancer susceptibility 11 (non-protein coding)
AliasesCARLo-7; LINC00990; TCONS_00014535
GeneCards (Weizmann)CASC11
Ensembl hg19 (Hinxton)ENSG00000249375 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249375 [Gene_View]  chr8:127730194-127733967 [Contig_View]  CASC11 [Vega]
ICGC DataPortalENSG00000249375
TCGA cBioPortalCASC11
AceView (NCBI)CASC11
Genatlas (Paris)CASC11
WikiGenes100270680
SOURCE (Princeton)CASC11
Genetics Home Reference (NIH)CASC11
Genomic and cartography
GoldenPath hg38 (UCSC)CASC11  -     chr8:127730194-127733967 -  8q24.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CASC11  -     8q24.21   [Description]    (hg19-Feb_2009)
EnsemblCASC11 - 8q24.21 [CytoView hg19]  CASC11 - 8q24.21 [CytoView hg38]
Mapping of homologs : NCBICASC11 [Mapview hg19]  CASC11 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BU941073 JX003873 JX003874
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CASC11
Cluster EST : UnigeneHs.742336 [ NCBI ]
CGAP (NCI)Hs.742336
Alternative Splicing GalleryENSG00000249375
Gene ExpressionCASC11 [ NCBI-GEO ]   CASC11 [ EBI - ARRAY_EXPRESS ]   CASC11 [ SEEK ]   CASC11 [ MEM ]
Gene Expression Viewer (FireBrowse)CASC11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100270680
GTEX Portal (Tissue expression)CASC11
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CASC11
DMDM Disease mutations100270680
Blocks (Seattle)CASC11
Human Protein AtlasENSG00000249375
Protein Interaction databases
FunCoupENSG00000249375
BioGRIDCASC11
STRING (EMBL)CASC11
ZODIACCASC11
Ontologies - Pathways
Huge Navigator CASC11 [HugePedia]
snp3D : Map Gene to Disease100270680
BioCentury BCIQCASC11
ClinGenCASC11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100270680
Clinical trialCASC11
Miscellaneous
canSAR (ICR)CASC11 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCASC11
EVEXCASC11
GoPubMedCASC11
iHOPCASC11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 16:56:48 CEST 2017

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