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CASC11 (cancer susceptibility 11)

Identity

Alias (NCBI)CARLO7
CARLo-7
LINC00990
MYMLR
TCONS_00014535
HGNC (Hugo) CASC11
HGNC Alias symbTCONS_00014535
LINC00990
CARLo-7
ENST00000518376
MYMLR
HGNC Alias namelong intergenic non-protein coding RNA 990
 MYC‐modulating lncRNA
HGNC Previous namecancer susceptibility candidate 11 (non-protein coding)
 cancer susceptibility 11 (non-protein coding)
LocusID (NCBI) 100270680
Atlas_Id 53484
Location 8q24.21  [Link to chromosome band 8q24]
Location_base_pair Starts at 127700608 and ends at 127733967 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)CASC11   48939
Cards
Entrez_Gene (NCBI)CASC11    cancer susceptibility 11
AliasesCARLO7; CARLo-7; LINC00990; MYMLR; 
TCONS_00014535
GeneCards (Weizmann)CASC11
Ensembl hg19 (Hinxton)ENSG00000249375 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249375 [Gene_View]  ENSG00000249375 [Sequence]  chr8:127700608-127733967 [Contig_View]  CASC11 [Vega]
ICGC DataPortalENSG00000249375
TCGA cBioPortalCASC11
AceView (NCBI)CASC11
Genatlas (Paris)CASC11
SOURCE (Princeton)CASC11
Genetics Home Reference (NIH)CASC11
Genomic and cartography
GoldenPath hg38 (UCSC)CASC11  -     chr8:127700608-127733967 -  8q24.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CASC11  -     8q24.21   [Description]    (hg19-Feb_2009)
GoldenPathCASC11 - 8q24.21 [CytoView hg19]  CASC11 - 8q24.21 [CytoView hg38]
ImmunoBaseENSG00000249375
Genome Data Viewer NCBICASC11 [Mapview hg19]  
OMIM617704   
Gene and transcription
Genbank (Entrez)BU941073 JX003873 JX003874
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)CASC11
Gene ExpressionCASC11 [ NCBI-GEO ]   CASC11 [ EBI - ARRAY_EXPRESS ]   CASC11 [ SEEK ]   CASC11 [ MEM ]
Gene Expression Viewer (FireBrowse)CASC11 [ Firebrowse - Broad ]
GenevisibleExpression of CASC11 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100270680
GTEX Portal (Tissue expression)CASC11
Human Protein AtlasENSG00000249375-CASC11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CASC11
Human Protein Atlas [tissue]ENSG00000249375-CASC11 [tissue]
Protein Interaction databases
BioGRIDCASC11
STRING (EMBL)CASC11
ZODIACCASC11
Ontologies - Pathways
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCASC11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:02:15 CEST 2021

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