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CASC15 (cancer susceptibility 15)

Identity

Alias (NCBI)CANT
LINC00340
lnc-SOX4-1
HGNC (Hugo) CASC15
HGNC Alias symblnc-SOX4-1
HGNC Previous nameLINC00340
HGNC Previous namelong intergenic non-protein coding RNA 340
 cancer susceptibility candidate 15 (non-protein coding)
 cancer susceptibility 15 (non-protein coding)
LocusID (NCBI) 401237
Atlas_Id 53514
Location 6p22.3  [Link to chromosome band 6p22]
Location_base_pair Starts at 21666413 and ends at 22195820 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CASC15 (6p22.3) / CASC15 (6p22.3)CASC15 (6p22.3) / PSMD11 (17q11.2)CASC15 (6p22.3) / SERPINB13 (18q21.33)
PUS10 (2p16.1) / CASC15 (6p22.3)RBM6 (3p21.31) / CASC15 (6p22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  del(6p) (loss of JARID2 and DTNBP1) in myeloid malignances


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Nervous system: Embryonal tumors: Neuroblastoma


External links

Nomenclature
HGNC (Hugo)CASC15   28245
Cards
Entrez_Gene (NCBI)CASC15  401237  cancer susceptibility 15
AliasesCANT; LINC00340; lnc-SOX4-1
GeneCards (Weizmann)CASC15
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:21666413-22195820 [Contig_View]  CASC15 [Vega]
TCGA cBioPortalCASC15
AceView (NCBI)CASC15
Genatlas (Paris)CASC15
WikiGenes401237
SOURCE (Princeton)CASC15
Genetics Home Reference (NIH)CASC15
Genomic and cartography
GoldenPath hg38 (UCSC)CASC15  -     chr6:21666413-22195820 +  6p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CASC15  -     6p22.3   [Description]    (hg19-Feb_2009)
GoldenPathCASC15 - 6p22.3 [CytoView hg19]  CASC15 - 6p22.3 [CytoView hg38]
genome Data Viewer NCBICASC15 [Mapview hg19]  
OMIM616610   
Gene and transcription
Genbank (Entrez)AF086455 AK022865 AK026189 AK094718 AK096633
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CASC15
Gene ExpressionCASC15 [ NCBI-GEO ]   CASC15 [ EBI - ARRAY_EXPRESS ]   CASC15 [ SEEK ]   CASC15 [ MEM ]
Gene Expression Viewer (FireBrowse)CASC15 [ Firebrowse - Broad ]
GenevisibleExpression of CASC15 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401237
GTEX Portal (Tissue expression)CASC15
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CASC15
DMDM Disease mutations401237
Blocks (Seattle)CASC15
IPIIPI00983849   
Protein Interaction databases
BioGRIDCASC15
STRING (EMBL)CASC15
ZODIACCASC15
Ontologies - Pathways
Huge Navigator CASC15 [HugePedia]
snp3D : Map Gene to Disease401237
BioCentury BCIQCASC15
ClinGenCASC15
Clinical trials, drugs, therapy
Protein Interactions : CTD401237
Clinical trialCASC15
Miscellaneous
canSAR (ICR)CASC15 (select the gene name)
HarmonizomeCASC15
DataMed IndexCASC15
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCASC15
EVEXCASC15
GoPubMedCASC15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 14 14:04:21 CEST 2020

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