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CASC16 (cancer susceptibility 16 (non-protein coding))

Identity

Alias_namesLINC00918
long intergenic non-protein coding RNA 918
Alias_symbol (synonym)LOC643714
Other alias
HGNC (Hugo) CASC16
LocusID (NCBI) 643714
Atlas_Id 53348
Location 16q12.1  [Link to chromosome band 16q12]
Location_base_pair Starts at 52552087 and ends at 52606975 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CASC16   48608
Cards
Entrez_Gene (NCBI)CASC16  643714  cancer susceptibility 16 (non-protein coding)
AliasesLINC00918
GeneCards (Weizmann)CASC16
Ensembl hg19 (Hinxton)ENSG00000249231 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249231 [Gene_View]  chr16:52552087-52606975 [Contig_View]  CASC16 [Vega]
ICGC DataPortalENSG00000249231
TCGA cBioPortalCASC16
AceView (NCBI)CASC16
Genatlas (Paris)CASC16
WikiGenes643714
SOURCE (Princeton)CASC16
Genetics Home Reference (NIH)CASC16
Genomic and cartography
GoldenPath hg38 (UCSC)CASC16  -     chr16:52552087-52606975 -  16q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CASC16  -     16q12.1   [Description]    (hg19-Feb_2009)
EnsemblCASC16 - 16q12.1 [CytoView hg19]  CASC16 - 16q12.1 [CytoView hg38]
Mapping of homologs : NCBICASC16 [Mapview hg19]  CASC16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC029912 BC034767 DB462404 DB523777
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CASC16
Cluster EST : UnigeneHs.662199 [ NCBI ]
CGAP (NCI)Hs.662199
Alternative Splicing GalleryENSG00000249231
Gene ExpressionCASC16 [ NCBI-GEO ]   CASC16 [ EBI - ARRAY_EXPRESS ]   CASC16 [ SEEK ]   CASC16 [ MEM ]
Gene Expression Viewer (FireBrowse)CASC16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)643714
GTEX Portal (Tissue expression)CASC16
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CASC16
DMDM Disease mutations643714
Blocks (Seattle)CASC16
Human Protein AtlasENSG00000249231
IPIIPI00888147   
Protein Interaction databases
FunCoupENSG00000249231
BioGRIDCASC16
STRING (EMBL)CASC16
ZODIACCASC16
Ontologies - Pathways
Huge Navigator CASC16 [HugePedia]
snp3D : Map Gene to Disease643714
BioCentury BCIQCASC16
ClinGenCASC16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643714
Clinical trialCASC16
Miscellaneous
canSAR (ICR)CASC16 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCASC16
EVEXCASC16
GoPubMedCASC16
iHOPCASC16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:00:30 CEST 2017

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