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CASC17 (cancer susceptibility 17 (non-protein coding))

Identity

Alias_symbol (synonym)LINC00600
Other alias
HGNC (Hugo) CASC17
LocusID (NCBI) 101928165
Atlas_Id 53529
Location 17q24.3  [Link to chromosome band 17q24]
Location_base_pair Starts at 71097774 and ends at 71202179 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CASC17   43911
Cards
Entrez_Gene (NCBI)CASC17  101928165  cancer susceptibility 17 (non-protein coding)
AliasesLINC00600
GeneCards (Weizmann)CASC17
Ensembl hg19 (Hinxton)ENSG00000260785 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260785 [Gene_View]  chr17:71097774-71202179 [Contig_View]  CASC17 [Vega]
ICGC DataPortalENSG00000260785
TCGA cBioPortalCASC17
AceView (NCBI)CASC17
Genatlas (Paris)CASC17
WikiGenes101928165
SOURCE (Princeton)CASC17
Genetics Home Reference (NIH)CASC17
Genomic and cartography
GoldenPath hg38 (UCSC)CASC17  -     chr17:71097774-71202179 -  17q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CASC17  -     17q24.3   [Description]    (hg19-Feb_2009)
EnsemblCASC17 - 17q24.3 [CytoView hg19]  CASC17 - 17q24.3 [CytoView hg38]
Mapping of homologs : NCBICASC17 [Mapview hg19]  CASC17 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC039327 BI459971
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CASC17
Cluster EST : UnigeneHs.407613 [ NCBI ]
CGAP (NCI)Hs.407613
Alternative Splicing GalleryENSG00000260785
Gene ExpressionCASC17 [ NCBI-GEO ]   CASC17 [ EBI - ARRAY_EXPRESS ]   CASC17 [ SEEK ]   CASC17 [ MEM ]
Gene Expression Viewer (FireBrowse)CASC17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101928165
GTEX Portal (Tissue expression)CASC17
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CASC17
DMDM Disease mutations101928165
Blocks (Seattle)CASC17
Human Protein AtlasENSG00000260785
Protein Interaction databases
FunCoupENSG00000260785
BioGRIDCASC17
STRING (EMBL)CASC17
ZODIACCASC17
Ontologies - Pathways
Huge Navigator CASC17 [HugePedia]
snp3D : Map Gene to Disease101928165
BioCentury BCIQCASC17
ClinGenCASC17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101928165
Clinical trialCASC17
Miscellaneous
canSAR (ICR)CASC17 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCASC17
EVEXCASC17
GoPubMedCASC17
iHOPCASC17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 16:56:49 CEST 2017

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