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CASC18 (cancer susceptibility 18 (non-protein coding))

Identity

Alias_symbol (synonym)LOC101929110
Other alias-
HGNC (Hugo) CASC18
LocusID (NCBI) 101929110
Atlas_Id 53517
Location 12q23.3  [Link to chromosome band 12q23]
Location_base_pair Starts at 105704203 and ends at 105744063 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CASC18   49463
Cards
Entrez_Gene (NCBI)CASC18  101929110  cancer susceptibility 18 (non-protein coding)
Aliases
GeneCards (Weizmann)CASC18
Ensembl hg19 (Hinxton)ENSG00000257859 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000257859 [Gene_View]  chr12:105704203-105744063 [Contig_View]  CASC18 [Vega]
ICGC DataPortalENSG00000257859
TCGA cBioPortalCASC18
AceView (NCBI)CASC18
Genatlas (Paris)CASC18
WikiGenes101929110
SOURCE (Princeton)CASC18
Genetics Home Reference (NIH)CASC18
Genomic and cartography
GoldenPath hg38 (UCSC)CASC18  -     chr12:105704203-105744063 +  12q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CASC18  -     12q23.3   [Description]    (hg19-Feb_2009)
EnsemblCASC18 - 12q23.3 [CytoView hg19]  CASC18 - 12q23.3 [CytoView hg38]
Mapping of homologs : NCBICASC18 [Mapview hg19]  CASC18 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB849958 AB849959 AB849960 AB849961 AB849962
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CASC18
Cluster EST : UnigeneHs.145944 [ NCBI ]
CGAP (NCI)Hs.145944
Alternative Splicing GalleryENSG00000257859
Gene ExpressionCASC18 [ NCBI-GEO ]   CASC18 [ EBI - ARRAY_EXPRESS ]   CASC18 [ SEEK ]   CASC18 [ MEM ]
Gene Expression Viewer (FireBrowse)CASC18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101929110
GTEX Portal (Tissue expression)CASC18
Human Protein AtlasENSG00000257859-CASC18 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CASC18
DMDM Disease mutations101929110
Blocks (Seattle)CASC18
Human Protein Atlas [tissue]ENSG00000257859-CASC18 [tissue]
Protein Interaction databases
FunCoupENSG00000257859
BioGRIDCASC18
STRING (EMBL)CASC18
ZODIACCASC18
Ontologies - Pathways
Huge Navigator CASC18 [HugePedia]
snp3D : Map Gene to Disease101929110
BioCentury BCIQCASC18
ClinGenCASC18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101929110
Clinical trialCASC18
Miscellaneous
canSAR (ICR)CASC18 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCASC18
EVEXCASC18
GoPubMedCASC18
iHOPCASC18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:43:06 CET 2017

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