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CASC19 (cancer susceptibility 19)

Identity

Alias_namesLINC01245
long intergenic non-protein coding RNA 1245
Alias_symbol (synonym)CARLo-6
Other aliasCARLO6
HGNC (Hugo) CASC19
LocusID (NCBI) 103021165
Atlas_Id 54831
Location 12q23.3  [Link to chromosome band 12q23]
Location_base_pair Starts at 127187786 and ends at 127197627 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CASC19   49476
Cards
Entrez_Gene (NCBI)CASC19  103021165  cancer susceptibility 19
AliasesCARLO6; CARLo-6; LINC01245
GeneCards (Weizmann)CASC19
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr8:127187786-127197627 [Contig_View]  CASC19 [Vega]
TCGA cBioPortalCASC19
AceView (NCBI)CASC19
Genatlas (Paris)CASC19
WikiGenes103021165
SOURCE (Princeton)CASC19
Genetics Home Reference (NIH)CASC19
Genomic and cartography
GoldenPath hg38 (UCSC)CASC19  -     chr8:127187786-127197627 -  12q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CASC19  -     12q23.3   [Description]    (hg19-Feb_2009)
EnsemblCASC19 - 12q23.3 [CytoView hg19]  CASC19 - 12q23.3 [CytoView hg38]
Mapping of homologs : NCBICASC19 [Mapview hg19]  CASC19 [Mapview hg38]
OMIM617703   
Gene and transcription
Genbank (Entrez)BI223175 DW435273 JX003871
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CASC19
Cluster EST : UnigeneHs.573407 [ NCBI ]
CGAP (NCI)Hs.573407
Gene ExpressionCASC19 [ NCBI-GEO ]   CASC19 [ EBI - ARRAY_EXPRESS ]   CASC19 [ SEEK ]   CASC19 [ MEM ]
Gene Expression Viewer (FireBrowse)CASC19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)103021165
GTEX Portal (Tissue expression)CASC19
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CASC19
DMDM Disease mutations103021165
Blocks (Seattle)CASC19
Protein Interaction databases
BioGRIDCASC19
STRING (EMBL)CASC19
ZODIACCASC19
Ontologies - Pathways
Huge Navigator CASC19 [HugePedia]
snp3D : Map Gene to Disease103021165
BioCentury BCIQCASC19
ClinGenCASC19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD103021165
Clinical trialCASC19
Miscellaneous
canSAR (ICR)CASC19 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCASC19
EVEXCASC19
GoPubMedCASC19
iHOPCASC19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:46:00 CEST 2018
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