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CASC19 (cancer susceptibility candidate 19 (non-protein coding))

Identity

Alias_namesLINC01245
long intergenic non-protein coding RNA 1245
Alias_symbol (synonym)CARLo-6
Other alias
HGNC (Hugo) CASC19
LocusID (NCBI) 103021165
Atlas_Id 54831
Location 8q24.21  [Link to chromosome band 8q24]
Location_base_pair Starts at 128200031 and ends at 128209872 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CASC19   49476
Cards
Entrez_Gene (NCBI)CASC19  103021165  cancer susceptibility candidate 19 (non-protein coding)
AliasesCARLo-6; LINC01245
GeneCards (Weizmann)CASC19
Ensembl hg19 (Hinxton) [Gene_View]  chr8:128200031-128209872 [Contig_View]  CASC19 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr8:128200031-128209872 [Contig_View]  CASC19 [Vega]
TCGA cBioPortalCASC19
AceView (NCBI)CASC19
Genatlas (Paris)CASC19
WikiGenes103021165
SOURCE (Princeton)CASC19
Genetics Home Reference (NIH)CASC19
Genomic and cartography
GoldenPath hg19 (UCSC)CASC19  -     chr8:128200031-128209872 -  8q24.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CASC19  -     8q24.21   [Description]    (hg38-Dec_2013)
EnsemblCASC19 - 8q24.21 [CytoView hg19]  CASC19 - 8q24.21 [CytoView hg38]
Mapping of homologs : NCBICASC19 [Mapview hg19]  CASC19 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BI223175 DW435273 HG501687 JX003871
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008046 NW_004929340
Consensus coding sequences : CCDS (NCBI)CASC19
Cluster EST : UnigeneHs.573407 [ NCBI ]
CGAP (NCI)Hs.573407
Gene ExpressionCASC19 [ NCBI-GEO ]   CASC19 [ EBI - ARRAY_EXPRESS ]   CASC19 [ SEEK ]   CASC19 [ MEM ]
Gene Expression Viewer (FireBrowse)CASC19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)103021165
GTEX Portal (Tissue expression)CASC19
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CASC19
DMDM Disease mutations103021165
Blocks (Seattle)CASC19
Protein Interaction databases
BioGRIDCASC19
STRING (EMBL)CASC19
ZODIACCASC19
Ontologies - Pathways
Huge Navigator CASC19 [HugePedia]
snp3D : Map Gene to Disease103021165
BioCentury BCIQCASC19
ClinGenCASC19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD103021165
Clinical trialCASC19
Miscellaneous
canSAR (ICR)CASC19 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCASC19
EVEXCASC19
GoPubMedCASC19
iHOPCASC19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:58:44 CET 2017

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