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CASC2 (cancer susceptibility 2 (non-protein coding))

Identity

Alias_namesC10orf5
chromosome 10 open reading frame 5
cancer susceptibility candidate 2
Other alias
HGNC (Hugo) CASC2
LocusID (NCBI) 255082
Atlas_Id 915
Location 10q26.11  [Link to chromosome band 10q26]

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CASC2   22933
Cards
Entrez_Gene (NCBI)CASC2  255082  cancer susceptibility 2 (non-protein coding)
AliasesC10orf5
GeneCards (Weizmann)CASC2
Ensembl hg19 (Hinxton)ENSG00000177640 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177640 [Gene_View]  - [Contig_View]  CASC2 [Vega]
ICGC DataPortalENSG00000177640
TCGA cBioPortalCASC2
AceView (NCBI)CASC2
Genatlas (Paris)CASC2
WikiGenes255082
SOURCE (Princeton)CASC2
Genetics Home Reference (NIH)CASC2
Genomic and cartography
GoldenPath hg38 (UCSC)CASC2  -  
GoldenPath hg19 (UCSC)CASC2  -  
EnsemblCASC2 - [CytoView hg19]  CASC2 - [CytoView hg38]
Mapping of homologs : NCBICASC2 [Mapview hg19]  CASC2 [Mapview hg38]
OMIM608598   
Gene and transcription
Genbank (Entrez)AI219353 AJ344228 AJ535620 AJ535621 AJ535622
RefSeq transcript (Entrez)NM_178816 NM_201377
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CASC2
Cluster EST : UnigeneHs.89387 [ NCBI ]
CGAP (NCI)Hs.89387
Alternative Splicing GalleryENSG00000177640
Gene ExpressionCASC2 [ NCBI-GEO ]   CASC2 [ EBI - ARRAY_EXPRESS ]   CASC2 [ SEEK ]   CASC2 [ MEM ]
Gene Expression Viewer (FireBrowse)CASC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)255082
GTEX Portal (Tissue expression)CASC2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IU53   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IU53  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IU53
Splice isoforms : SwissVarQ8IU53
PhosPhoSitePlusQ8IU53
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CASC2
DMDM Disease mutations255082
Blocks (Seattle)CASC2
SuperfamilyQ8IU53
Human Protein AtlasENSG00000177640
Peptide AtlasQ8IU53
HPRD12266
IPIIPI00398773   IPI00888445   IPI00383341   
Protein Interaction databases
DIP (DOE-UCLA)Q8IU53
IntAct (EBI)Q8IU53
FunCoupENSG00000177640
BioGRIDCASC2
STRING (EMBL)CASC2
ZODIACCASC2
Ontologies - Pathways
QuickGOQ8IU53
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCASC2
Atlas of Cancer Signalling NetworkCASC2
Wikipedia pathwaysCASC2
Orthology - Evolution
OrthoDB255082
GeneTree (enSembl)ENSG00000177640
Phylogenetic Trees/Animal Genes : TreeFamCASC2
HOVERGENQ8IU53
HOGENOMQ8IU53
Homologs : HomoloGeneCASC2
Homology/Alignments : Family Browser (UCSC)CASC2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCASC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CASC2
dbVarCASC2
ClinVarCASC2
1000_GenomesCASC2 
Exome Variant ServerCASC2
ExAC (Exome Aggregation Consortium)CASC2 (select the gene name)
Genetic variants : HAPMAP255082
Genomic Variants (DGV)CASC2 [DGVbeta]
DECIPHERCASC2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCASC2 
Mutations
ICGC Data PortalCASC2 
TCGA Data PortalCASC2 
Broad Tumor PortalCASC2
OASIS PortalCASC2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCASC2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CASC2
DgiDB (Drug Gene Interaction Database)CASC2
DoCM (Curated mutations)CASC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CASC2 (select a term)
intoGenCASC2
Cancer3DCASC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608598   
Orphanet
MedgenCASC2
Genetic Testing Registry CASC2
NextProtQ8IU53 [Medical]
TSGene255082
GENETestsCASC2
Target ValidationCASC2
Huge Navigator CASC2 [HugePedia]
snp3D : Map Gene to Disease255082
BioCentury BCIQCASC2
ClinGenCASC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD255082
Chemical/Pharm GKB GenePA134938480
Clinical trialCASC2
Miscellaneous
canSAR (ICR)CASC2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCASC2
EVEXCASC2
GoPubMedCASC2
iHOPCASC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:00:31 CEST 2017

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