Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CASC20 (cancer susceptibility 20 (non-protein coding))

Identity

Other alias-
HGNC (Hugo) CASC20
LocusID (NCBI) 101929244
Atlas_Id 53637
Location 20p12.3  [Link to chromosome band 20p12]
Location_base_pair Starts at 6426732 and ends at 6528459 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CASC20   49477
Cards
Entrez_Gene (NCBI)CASC20  101929244  cancer susceptibility 20 (non-protein coding)
Aliases
GeneCards (Weizmann)CASC20
Ensembl hg19 (Hinxton)ENSG00000229876 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000229876 [Gene_View]  chr20:6426732-6528459 [Contig_View]  CASC20 [Vega]
ICGC DataPortalENSG00000229876
TCGA cBioPortalCASC20
AceView (NCBI)CASC20
Genatlas (Paris)CASC20
WikiGenes101929244
SOURCE (Princeton)CASC20
Genetics Home Reference (NIH)CASC20
Genomic and cartography
GoldenPath hg38 (UCSC)CASC20  -     chr20:6426732-6528459 +  20p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CASC20  -     20p12.3   [Description]    (hg19-Feb_2009)
EnsemblCASC20 - 20p12.3 [CytoView hg19]  CASC20 - 20p12.3 [CytoView hg38]
Mapping of homologs : NCBICASC20 [Mapview hg19]  CASC20 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY007089
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CASC20
Cluster EST : UnigeneHs.542488 [ NCBI ]
CGAP (NCI)Hs.542488
Alternative Splicing GalleryENSG00000229876
Gene ExpressionCASC20 [ NCBI-GEO ]   CASC20 [ EBI - ARRAY_EXPRESS ]   CASC20 [ SEEK ]   CASC20 [ MEM ]
Gene Expression Viewer (FireBrowse)CASC20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101929244
GTEX Portal (Tissue expression)CASC20
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CASC20
DMDM Disease mutations101929244
Blocks (Seattle)CASC20
Human Protein AtlasENSG00000229876
Protein Interaction databases
FunCoupENSG00000229876
BioGRIDCASC20
STRING (EMBL)CASC20
ZODIACCASC20
Ontologies - Pathways
Huge Navigator CASC20 [HugePedia]
snp3D : Map Gene to Disease101929244
BioCentury BCIQCASC20
ClinGenCASC20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101929244
Clinical trialCASC20
Miscellaneous
canSAR (ICR)CASC20 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCASC20
EVEXCASC20
GoPubMedCASC20
iHOPCASC20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:08:54 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.