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CASC21 (cancer susceptibility 21 (non-protein coding))

Identity

Alias_namesLINC01244
long intergenic non-protein coding RNA 1244
Alias_symbol (synonym)CARLo-2
Other alias
HGNC (Hugo) CASC21
LocusID (NCBI) 103021164
Atlas_Id 53836
Location 8q24.21  [Link to chromosome band 8q24]
Location_base_pair Starts at 127244637 and ends at 127392631 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CASC21   49836
Cards
Entrez_Gene (NCBI)CASC21  103021164  cancer susceptibility 21 (non-protein coding)
AliasesCARLo-2; LINC01244
GeneCards (Weizmann)CASC21
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr8:127244637-127392631 [Contig_View]  CASC21 [Vega]
TCGA cBioPortalCASC21
AceView (NCBI)CASC21
Genatlas (Paris)CASC21
WikiGenes103021164
SOURCE (Princeton)CASC21
Genetics Home Reference (NIH)CASC21
Genomic and cartography
GoldenPath hg38 (UCSC)CASC21  -     chr8:127244637-127392631 +  8q24.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CASC21  -     8q24.21   [Description]    (hg19-Feb_2009)
EnsemblCASC21 - 8q24.21 [CytoView hg19]  CASC21 - 8q24.21 [CytoView hg38]
Mapping of homologs : NCBICASC21 [Mapview hg19]  CASC21 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL709378 JX003867
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CASC21
Cluster EST : UnigeneHs.571531 [ NCBI ]
CGAP (NCI)Hs.571531
Gene ExpressionCASC21 [ NCBI-GEO ]   CASC21 [ EBI - ARRAY_EXPRESS ]   CASC21 [ SEEK ]   CASC21 [ MEM ]
Gene Expression Viewer (FireBrowse)CASC21 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)103021164
GTEX Portal (Tissue expression)CASC21
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CASC21
DMDM Disease mutations103021164
Blocks (Seattle)CASC21
Protein Interaction databases
BioGRIDCASC21
STRING (EMBL)CASC21
ZODIACCASC21
Ontologies - Pathways
Huge Navigator CASC21 [HugePedia]
snp3D : Map Gene to Disease103021164
BioCentury BCIQCASC21
ClinGenCASC21
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD103021164
Clinical trialCASC21
Miscellaneous
canSAR (ICR)CASC21 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCASC21
EVEXCASC21
GoPubMedCASC21
iHOPCASC21
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:00:31 CEST 2017

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