Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CASC22 (cancer susceptibility 22)


Alias (NCBI)LINC01373
HGNC (Hugo) CASC22
HGNC Alias symbTCONS_00024290
HGNC Previous nameLINC01373
HGNC Previous namelong intergenic non-protein coding RNA 1373
 cancer susceptibility candidate 22 (non-protein coding)
 cancer susceptibility 22 (non-protein coding)
LocusID (NCBI) 283854
Atlas_Id 53996
Location 16q12.1  [Link to chromosome band 16q12]
Location_base_pair Starts at 52258564 and ends at 52280299 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)


Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)CASC22   50627
Entrez_Gene (NCBI)CASC22    cancer susceptibility 22
AliasesLINC01373; LincRNA-ENST00000515084; TCONS_00024290
GeneCards (Weizmann)CASC22
Ensembl hg19 (Hinxton)ENSG00000260887 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260887 [Gene_View]  ENSG00000260887 [Sequence]  chr16:52258564-52280299 [Contig_View]  CASC22 [Vega]
ICGC DataPortalENSG00000260887
TCGA cBioPortalCASC22
AceView (NCBI)CASC22
Genatlas (Paris)CASC22
SOURCE (Princeton)CASC22
Genetics Home Reference (NIH)CASC22
Genomic and cartography
GoldenPath hg38 (UCSC)CASC22  -     chr16:52258564-52280299 +  16q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CASC22  -     16q12.1   [Description]    (hg19-Feb_2009)
GoldenPathCASC22 - 16q12.1 [CytoView hg19]  CASC22 - 16q12.1 [CytoView hg38]
Genome Data Viewer NCBICASC22 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK093211 AW772079
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)CASC22
Gene ExpressionCASC22 [ NCBI-GEO ]   CASC22 [ EBI - ARRAY_EXPRESS ]   CASC22 [ SEEK ]   CASC22 [ MEM ]
Gene Expression Viewer (FireBrowse)CASC22 [ Firebrowse - Broad ]
GenevisibleExpression of CASC22 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283854
GTEX Portal (Tissue expression)CASC22
Human Protein AtlasENSG00000260887-CASC22 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CASC22
Human Protein Atlas [tissue]ENSG00000260887-CASC22 [tissue]
Protein Interaction databases
Ontologies - Pathways
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:02:17 CEST 2021

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