Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CASC22 (cancer susceptibility 22)

Identity

Alias_namesLINC01373
long intergenic non-protein coding RNA 1373
Alias_symbol (synonym)TCONS_00024290
LincRNA-ENST00000515084
Other alias
HGNC (Hugo) CASC22
LocusID (NCBI) 283854
Atlas_Id 53996
Location 16q12.1  [Link to chromosome band 16q12]
Location_base_pair Starts at 52258564 and ends at 52280299 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CASC22   50627
Cards
Entrez_Gene (NCBI)CASC22  283854  cancer susceptibility 22
AliasesLINC01373; LincRNA-ENST00000515084; TCONS_00024290
GeneCards (Weizmann)CASC22
Ensembl hg19 (Hinxton)ENSG00000260887 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260887 [Gene_View]  ENSG00000260887 [Sequence]  chr16:52258564-52280299 [Contig_View]  CASC22 [Vega]
ICGC DataPortalENSG00000260887
TCGA cBioPortalCASC22
AceView (NCBI)CASC22
Genatlas (Paris)CASC22
WikiGenes283854
SOURCE (Princeton)CASC22
Genetics Home Reference (NIH)CASC22
Genomic and cartography
GoldenPath hg38 (UCSC)CASC22  -     chr16:52258564-52280299 +  16q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CASC22  -     16q12.1   [Description]    (hg19-Feb_2009)
EnsemblCASC22 - 16q12.1 [CytoView hg19]  CASC22 - 16q12.1 [CytoView hg38]
Mapping of homologs : NCBICASC22 [Mapview hg19]  CASC22 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093211 AW772079
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CASC22
Cluster EST : UnigeneHs.266768 [ NCBI ]
CGAP (NCI)Hs.266768
Alternative Splicing GalleryENSG00000260887
Gene ExpressionCASC22 [ NCBI-GEO ]   CASC22 [ EBI - ARRAY_EXPRESS ]   CASC22 [ SEEK ]   CASC22 [ MEM ]
Gene Expression Viewer (FireBrowse)CASC22 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)283854
GTEX Portal (Tissue expression)CASC22
Human Protein AtlasENSG00000260887-CASC22 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CASC22
DMDM Disease mutations283854
Blocks (Seattle)CASC22
Human Protein Atlas [tissue]ENSG00000260887-CASC22 [tissue]
Protein Interaction databases
FunCoupENSG00000260887
BioGRIDCASC22
STRING (EMBL)CASC22
ZODIACCASC22
Ontologies - Pathways
Huge Navigator CASC22 [HugePedia]
snp3D : Map Gene to Disease283854
BioCentury BCIQCASC22
ClinGenCASC22
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283854
Clinical trialCASC22
Miscellaneous
canSAR (ICR)CASC22 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCASC22
EVEXCASC22
GoPubMedCASC22
iHOPCASC22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 10:55:46 CET 2018
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