Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CASC4 (cancer susceptibility 4)

Identity

Alias_symbol (synonym)H63
DKFZp459F1927
Other alias
HGNC (Hugo) CASC4
LocusID (NCBI) 113201
Atlas_Id 40785
Location 15q15.3  [Link to chromosome band 15q15]
Location_base_pair Starts at 44288711 and ends at 44415761 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BARD1 (2q35) / CASC4 (15q15.3)CASC4 (15q15.3) / CASC4 (15q15.3)CASC4 (15q15.3) / LINGO1 (15q24.3)
CASC4 (15q15.3) / SORD (15q21.1)CASC4 (15q15.3) / TGM5 (15q15.2)CASC4 15q15.3 / TGM5 15q15.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CASC4   24892
Cards
Entrez_Gene (NCBI)CASC4  113201  cancer susceptibility 4
AliasesH63
GeneCards (Weizmann)CASC4
Ensembl hg19 (Hinxton)ENSG00000166734 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166734 [Gene_View]  chr15:44288711-44415761 [Contig_View]  CASC4 [Vega]
ICGC DataPortalENSG00000166734
TCGA cBioPortalCASC4
AceView (NCBI)CASC4
Genatlas (Paris)CASC4
WikiGenes113201
SOURCE (Princeton)CASC4
Genetics Home Reference (NIH)CASC4
Genomic and cartography
GoldenPath hg38 (UCSC)CASC4  -     chr15:44288711-44415761 +  15q15.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CASC4  -     15q15.3   [Description]    (hg19-Feb_2009)
EnsemblCASC4 - 15q15.3 [CytoView hg19]  CASC4 - 15q15.3 [CytoView hg38]
Mapping of homologs : NCBICASC4 [Mapview hg19]  CASC4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF103804 AK022565 AK095068 AK098265 AK291026
RefSeq transcript (Entrez)NM_138423 NM_177974
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CASC4
Cluster EST : UnigeneHs.512867 [ NCBI ]
CGAP (NCI)Hs.512867
Alternative Splicing GalleryENSG00000166734
Gene ExpressionCASC4 [ NCBI-GEO ]   CASC4 [ EBI - ARRAY_EXPRESS ]   CASC4 [ SEEK ]   CASC4 [ MEM ]
Gene Expression Viewer (FireBrowse)CASC4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)113201
GTEX Portal (Tissue expression)CASC4
Human Protein AtlasENSG00000166734-CASC4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P4E1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P4E1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P4E1
Splice isoforms : SwissVarQ6P4E1
PhosPhoSitePlusQ6P4E1
Domains : Interpro (EBI)CASC4    GOLM1/CASC4   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CASC4
DMDM Disease mutations113201
Blocks (Seattle)CASC4
SuperfamilyQ6P4E1
Human Protein Atlas [tissue]ENSG00000166734-CASC4 [tissue]
Peptide AtlasQ6P4E1
HPRD11018
IPIIPI00383014   IPI00304892   IPI00940961   IPI00167232   IPI00374590   
Protein Interaction databases
DIP (DOE-UCLA)Q6P4E1
IntAct (EBI)Q6P4E1
FunCoupENSG00000166734
BioGRIDCASC4
STRING (EMBL)CASC4
ZODIACCASC4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:43:08 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.