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CASC8 (cancer susceptibility candidate 8 (non-protein coding))

Identity

Alias_symbol (synonym)LINC00860
CARLo-1
Other alias
HGNC (Hugo) CASC8
LocusID (NCBI) 727677
Atlas_Id 53437
Location 8q24.21  [Link to chromosome band 8q24]
Location_base_pair Starts at 128455595 and ends at 128494384 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CASC8   45129
Cards
Entrez_Gene (NCBI)CASC8  727677  cancer susceptibility candidate 8 (non-protein coding)
AliasesCARLo-1; LINC00860
GeneCards (Weizmann)CASC8
Ensembl hg19 (Hinxton)ENSG00000246228 [Gene_View]  chr8:128455595-128494384 [Contig_View]  CASC8 [Vega]
Ensembl hg38 (Hinxton)ENSG00000246228 [Gene_View]  chr8:128455595-128494384 [Contig_View]  CASC8 [Vega]
ICGC DataPortalENSG00000246228
TCGA cBioPortalCASC8
AceView (NCBI)CASC8
Genatlas (Paris)CASC8
WikiGenes727677
SOURCE (Princeton)CASC8
Genetics Home Reference (NIH)CASC8
Genomic and cartography
GoldenPath hg19 (UCSC)CASC8  -     chr8:128455595-128494384 -  8q24.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CASC8  -     8q24.21   [Description]    (hg38-Dec_2013)
EnsemblCASC8 - 8q24.21 [CytoView hg19]  CASC8 - 8q24.21 [CytoView hg38]
Mapping of homologs : NCBICASC8 [Mapview hg19]  CASC8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DQ515896 DQ515897 DQ515898 DQ515899 HG501689
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008046 NW_004929340
Consensus coding sequences : CCDS (NCBI)CASC8
Cluster EST : UnigeneHs.736625 [ NCBI ]
CGAP (NCI)Hs.736625
Alternative Splicing GalleryENSG00000246228
Gene ExpressionCASC8 [ NCBI-GEO ]   CASC8 [ EBI - ARRAY_EXPRESS ]   CASC8 [ SEEK ]   CASC8 [ MEM ]
Gene Expression Viewer (FireBrowse)CASC8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)727677
GTEX Portal (Tissue expression)CASC8
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CASC8
DMDM Disease mutations727677
Blocks (Seattle)CASC8
Human Protein AtlasENSG00000246228
Protein Interaction databases
FunCoupENSG00000246228
BioGRIDCASC8
STRING (EMBL)CASC8
ZODIACCASC8
Ontologies - Pathways
Huge Navigator CASC8 [HugePedia]
snp3D : Map Gene to Disease727677
BioCentury BCIQCASC8
ClinGenCASC8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD727677
Clinical trialCASC8
Miscellaneous
canSAR (ICR)CASC8 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCASC8
EVEXCASC8
GoPubMedCASC8
iHOPCASC8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 14:55:05 CEST 2017

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