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CASC9 (cancer susceptibility candidate 9 (non-protein coding))

Identity

Alias_symbol (synonym)LINC00981
ESCCAL-1
Other aliasESSCAL1
HGNC (Hugo) CASC9
LocusID (NCBI) 101805492
Atlas_Id 53426
Location 8q21.11  [Link to chromosome band 8q21]
Location_base_pair Starts at 76135352 and ends at 76190716 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CASC9   48906
Cards
Entrez_Gene (NCBI)CASC9  101805492  cancer susceptibility candidate 9 (non-protein coding)
AliasesESCCAL-1; ESSCAL1; LINC00981
GeneCards (Weizmann)CASC9
Ensembl hg19 (Hinxton) [Gene_View]  chr8:76135352-76190716 [Contig_View]  CASC9 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr8:76135352-76190716 [Contig_View]  CASC9 [Vega]
TCGA cBioPortalCASC9
AceView (NCBI)CASC9
Genatlas (Paris)CASC9
WikiGenes101805492
SOURCE (Princeton)CASC9
Genetics Home Reference (NIH)CASC9
Genomic and cartography
GoldenPath hg19 (UCSC)CASC9  -     chr8:76135352-76190716 -  8q21.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CASC9  -     8q21.11   [Description]    (hg38-Dec_2013)
EnsemblCASC9 - 8q21.11 [CytoView hg19]  CASC9 - 8q21.11 [CytoView hg38]
Mapping of homologs : NCBICASC9 [Mapview hg19]  CASC9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI205540 BC062758 BE866214 CN273839 CN418510
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008183 NW_004929339
Consensus coding sequences : CCDS (NCBI)CASC9
Cluster EST : UnigeneHs.571424 [ NCBI ]
CGAP (NCI)Hs.571424
Gene ExpressionCASC9 [ NCBI-GEO ]   CASC9 [ EBI - ARRAY_EXPRESS ]   CASC9 [ SEEK ]   CASC9 [ MEM ]
Gene Expression Viewer (FireBrowse)CASC9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101805492
GTEX Portal (Tissue expression)CASC9
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CASC9
DMDM Disease mutations101805492
Blocks (Seattle)CASC9
Protein Interaction databases
BioGRIDCASC9
STRING (EMBL)CASC9
ZODIACCASC9
Ontologies - Pathways
Huge Navigator CASC9 [HugePedia]
snp3D : Map Gene to Disease101805492
BioCentury BCIQCASC9
ClinGenCASC9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101805492
Clinical trialCASC9
Miscellaneous
canSAR (ICR)CASC9 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCASC9
EVEXCASC9
GoPubMedCASC9
iHOPCASC9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:58:46 CET 2017

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