Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CASD1 (CAS1 domain containing 1)

Identity

Alias_symbol (synonym)FLJ21213
FLJ21879
C7orf12
Other aliasNBLA04196
HGNC (Hugo) CASD1
LocusID (NCBI) 64921
Atlas_Id 61425
Location 7q21.3  [Link to chromosome band 7q21]
Location_base_pair Starts at 94509858 and ends at 94557016 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CASD1 (7q21.3) / VWC2 (7p12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CASD1   16014
Cards
Entrez_Gene (NCBI)CASD1  64921  CAS1 domain containing 1
AliasesC7orf12; NBLA04196
GeneCards (Weizmann)CASD1
Ensembl hg19 (Hinxton)ENSG00000127995 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000127995 [Gene_View]  chr7:94509858-94557016 [Contig_View]  CASD1 [Vega]
ICGC DataPortalENSG00000127995
TCGA cBioPortalCASD1
AceView (NCBI)CASD1
Genatlas (Paris)CASD1
WikiGenes64921
SOURCE (Princeton)CASD1
Genetics Home Reference (NIH)CASD1
Genomic and cartography
GoldenPath hg38 (UCSC)CASD1  -     chr7:94509858-94557016 +  7q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CASD1  -     7q21.3   [Description]    (hg19-Feb_2009)
EnsemblCASD1 - 7q21.3 [CytoView hg19]  CASD1 - 7q21.3 [CytoView hg38]
Mapping of homologs : NCBICASD1 [Mapview hg19]  CASD1 [Mapview hg38]
OMIM611686   
Gene and transcription
Genbank (Entrez)AB073397 AF355594 AF397424 AK024866 AK025532
RefSeq transcript (Entrez)NM_022900
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CASD1
Cluster EST : UnigeneHs.260041 [ NCBI ]
CGAP (NCI)Hs.260041
Alternative Splicing GalleryENSG00000127995
Gene ExpressionCASD1 [ NCBI-GEO ]   CASD1 [ EBI - ARRAY_EXPRESS ]   CASD1 [ SEEK ]   CASD1 [ MEM ]
Gene Expression Viewer (FireBrowse)CASD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64921
GTEX Portal (Tissue expression)CASD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96PB1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96PB1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96PB1
Splice isoforms : SwissVarQ96PB1
PhosPhoSitePlusQ96PB1
Domains : Interpro (EBI)Cas1_AcylTrans_dom    Cyclin-like   
Domain families : Pfam (Sanger)Cas1_AcylT (PF07779)   
Domain families : Pfam (NCBI)pfam07779   
Conserved Domain (NCBI)CASD1
DMDM Disease mutations64921
Blocks (Seattle)CASD1
SuperfamilyQ96PB1
Human Protein AtlasENSG00000127995
Peptide AtlasQ96PB1
HPRD13004
IPIIPI00103873   IPI00927729   IPI00029402   IPI00927302   
Protein Interaction databases
DIP (DOE-UCLA)Q96PB1
IntAct (EBI)Q96PB1
FunCoupENSG00000127995
BioGRIDCASD1
STRING (EMBL)CASD1
ZODIACCASD1
Ontologies - Pathways
QuickGOQ96PB1
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkCASD1
Atlas of Cancer Signalling NetworkCASD1
Wikipedia pathwaysCASD1
Orthology - Evolution
OrthoDB64921
GeneTree (enSembl)ENSG00000127995
Phylogenetic Trees/Animal Genes : TreeFamCASD1
HOVERGENQ96PB1
HOGENOMQ96PB1
Homologs : HomoloGeneCASD1
Homology/Alignments : Family Browser (UCSC)CASD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCASD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CASD1
dbVarCASD1
ClinVarCASD1
1000_GenomesCASD1 
Exome Variant ServerCASD1
ExAC (Exome Aggregation Consortium)CASD1 (select the gene name)
Genetic variants : HAPMAP64921
Genomic Variants (DGV)CASD1 [DGVbeta]
DECIPHERCASD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCASD1 
Mutations
ICGC Data PortalCASD1 
TCGA Data PortalCASD1 
Broad Tumor PortalCASD1
OASIS PortalCASD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCASD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCASD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CASD1
DgiDB (Drug Gene Interaction Database)CASD1
DoCM (Curated mutations)CASD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CASD1 (select a term)
intoGenCASD1
Cancer3DCASD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611686   
Orphanet
MedgenCASD1
Genetic Testing Registry CASD1
NextProtQ96PB1 [Medical]
TSGene64921
GENETestsCASD1
Huge Navigator CASD1 [HugePedia]
snp3D : Map Gene to Disease64921
BioCentury BCIQCASD1
ClinGenCASD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64921
Chemical/Pharm GKB GenePA143485408
Clinical trialCASD1
Miscellaneous
canSAR (ICR)CASD1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCASD1
EVEXCASD1
GoPubMedCASD1
iHOPCASD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:04:23 CEST 2017

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