Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CASK (calcium/calmodulin-dependent serine protein kinase (MAGUK family))

Identity

Other namesCAGH39
CAMGUK
CMG
FGS4
LIN2
MICPCH
MRXSNA
TNRC8
HGNC (Hugo) CASK
LocusID (NCBI) 8573
Location Xp11.4
Location_base_pair Starts at 41374189 and ends at 41782287 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Leukemias implicated (Data extracted from papers in the Atlas)

Leukemias t0817q24q22ID1494

External links

Nomenclature
HGNC (Hugo)CASK   1497
Cards
Entrez_Gene (NCBI)CASK  8573  calcium/calmodulin-dependent serine protein kinase (MAGUK family)
GeneCards (Weizmann)CASK
Ensembl (Hinxton)ENSG00000147044 [Gene_View]  chrX:41374189-41782287 [Contig_View]  CASK [Vega]
ICGC DataPortalENSG00000147044
cBioPortalCASK
AceView (NCBI)CASK
Genatlas (Paris)CASK
WikiGenes8573
SOURCE (Princeton)NM_001126054 NM_001126055 NM_003688
Genomic and cartography
GoldenPath (UCSC)CASK  -  Xp11.4   chrX:41374189-41782287 -  Xp11.4   [Description]    (hg19-Feb_2009)
EnsemblCASK - Xp11.4 [CytoView]
Mapping of homologs : NCBICASK [Mapview]
OMIM300172   300422   300749   
Gene and transcription
Genbank (Entrez)AB039327 AB208859 AF032119 AF035582 AF262404
RefSeq transcript (Entrez)NM_001126054 NM_001126055 NM_003688
RefSeq genomic (Entrez)AC_000155 NC_000023 NC_018934 NG_016754 NT_079573 NW_001842361 NW_004929439
Consensus coding sequences : CCDS (NCBI)CASK
Cluster EST : UnigeneHs.495984 [ NCBI ]
CGAP (NCI)Hs.495984
Alternative Splicing : Fast-db (Paris)GSHG0032053
Alternative Splicing GalleryENSG00000147044
Gene ExpressionCASK [ NCBI-GEO ]     CASK [ SEEK ]   CASK [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14936 (Uniprot)
NextProtO14936  [Medical]
With graphics : InterProO14936
Splice isoforms : SwissVarO14936 (Swissvar)
Catalytic activity : Enzyme2.7.11.1 [ Enzyme-Expasy ]   2.7.11.12.7.11.1 [ IntEnz-EBI ]   2.7.11.1 [ BRENDA ]   2.7.11.1 [ KEGG ]   
Domaine pattern : Prosite (Expaxy)GUANYLATE_KINASE_1 (PS00856)    GUANYLATE_KINASE_2 (PS50052)    L27 (PS51022)    PDZ (PS50106)    PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)    SH3 (PS50002)   
Domains : Interpro (EBI)GK/Ca_channel_bsu [organisation]   Guanylate_kin-like [organisation]   Guanylate_kinase_CS [organisation]   Kinase-like_dom [organisation]   L27 [organisation]   L27_C [organisation]   P-loop_NTPase [organisation]   PDZ [organisation]   Prot_kinase_dom [organisation]   Ser/Thr_dual-sp_kinase_dom [organisation]   SH3_2 [organisation]   SH3_domain [organisation]  
Related proteins : CluSTrO14936
Domain families : Pfam (Sanger)Guanylate_kin (PF00625)    L27 (PF02828)    PDZ (PF00595)    Pkinase (PF00069)    SH3_2 (PF07653)   
Domain families : Pfam (NCBI)pfam00625    pfam02828    pfam00595    pfam00069    pfam07653   
Domain families : Smart (EMBL)GuKc (SM00072)  L27 (SM00569)  PDZ (SM00228)  S_TKc (SM00220)  SH3 (SM00326)  
DMDM Disease mutations8573
Blocks (Seattle)O14936
PDB (SRS)1KGD    1KWA    1ZL8    3C0G    3C0H    3C0I    3MFR    3MFS    3MFT    3MFU    3TAC   
PDB (PDBSum)1KGD    1KWA    1ZL8    3C0G    3C0H    3C0I    3MFR    3MFS    3MFT    3MFU    3TAC   
PDB (IMB)1KGD    1KWA    1ZL8    3C0G    3C0H    3C0I    3MFR    3MFS    3MFT    3MFU    3TAC   
PDB (RSDB)1KGD    1KWA    1ZL8    3C0G    3C0H    3C0I    3MFR    3MFS    3MFT    3MFU    3TAC   
Human Protein AtlasENSG00000147044 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasO14936
HPRD02164
IPIIPI00514301   IPI00555605   IPI00877929   IPI00937304   IPI00646452   IPI00641315   IPI00644270   IPI00877806   IPI01015842   
Protein Interaction databases
DIP (DOE-UCLA)O14936
IntAct (EBI)O14936
FunCoupENSG00000147044
BioGRIDCASK
InParanoidO14936
Interologous Interaction database O14936
IntegromeDBCASK
STRING (EMBL)CASK
Ontologies - Pathways
Ontology : AmiGOnegative regulation of cell-matrix adhesion  guanylate kinase activity  protein serine/threonine kinase activity  protein binding  calmodulin binding  ATP binding  basement membrane  nuclear lamina  nucleolus  cytoplasm  cytosol  plasma membrane  cell-cell junction  cell adhesion  negative regulation of keratinocyte proliferation  actin cytoskeleton  basolateral plasma membrane  nuclear matrix  extracellular matrix organization  neurexin family protein binding  presynaptic membrane  positive regulation of transcription from RNA polymerase II promoter  cilium membrane  negative regulation of wound healing  calcium ion import  positive regulation of calcium ion import  negative regulation of cellular response to growth factor stimulus  
Ontology : EGO-EBInegative regulation of cell-matrix adhesion  guanylate kinase activity  protein serine/threonine kinase activity  protein binding  calmodulin binding  ATP binding  basement membrane  nuclear lamina  nucleolus  cytoplasm  cytosol  plasma membrane  cell-cell junction  cell adhesion  negative regulation of keratinocyte proliferation  actin cytoskeleton  basolateral plasma membrane  nuclear matrix  extracellular matrix organization  neurexin family protein binding  presynaptic membrane  positive regulation of transcription from RNA polymerase II promoter  cilium membrane  negative regulation of wound healing  calcium ion import  positive regulation of calcium ion import  negative regulation of cellular response to growth factor stimulus  
Pathways : BIOCARTASynaptic Proteins at the Synaptic Junction [Genes]   
Pathways : KEGGTight junction   
Protein Interaction DatabaseCASK
Wikipedia pathwaysCASK
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CASK
snp3D : Map Gene to Disease8573
SNP (GeneSNP Utah)CASK
SNP : HGBaseCASK
Genetic variants : HAPMAPCASK
Exome VariantCASK
1000_GenomesCASK 
ICGC programENSG00000147044 
Somatic Mutations in Cancer : COSMICCASK 
CONAN: Copy Number AnalysisCASK 
Mutations and Diseases : HGMDCASK
Genomic VariantsCASK  CASK [DGVbeta]
dbVarCASK
ClinVarCASK
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM300172    300422    300749   
MedgenCASK
GENETestsCASK
Disease Genetic AssociationCASK
Huge Navigator CASK [HugePedia]  CASK [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneCASK
Homology/Alignments : Family Browser (UCSC)CASK
Phylogenetic Trees/Animal Genes : TreeFamCASK
Chemical/Protein Interactions : CTD8573
Chemical/Pharm GKB GenePA26081
Clinical trialCASK
Cancer Resource (Charite)ENSG00000147044
Other databases
Probes
Litterature
PubMed82 Pubmed reference(s) in Entrez
CoreMineCASK
iHOPCASK
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jul 11 16:48:01 CEST 2014
Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.