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CASP16 (caspase 16, apoptosis-related cysteine peptidase (putative))

Identity

Other aliasCASP14L
HGNC (Hugo) CASP16
LocusID (NCBI) 197350
Atlas_Id 61428
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 3194244 and ends at 3199964 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CASP16   27290
Cards
Entrez_Gene (NCBI)CASP16  197350  caspase 16, apoptosis-related cysteine peptidase (putative)
AliasesCASP14L
GeneCards (Weizmann)CASP16
Ensembl hg19 (Hinxton) [Gene_View]  chr16:3194244-3199964 [Contig_View]  CASP16 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:3194244-3199964 [Contig_View]  CASP16 [Vega]
TCGA cBioPortalCASP16
AceView (NCBI)CASP16
Genatlas (Paris)CASP16
WikiGenes197350
SOURCE (Princeton)CASP16
Genetics Home Reference (NIH)CASP16
Genomic and cartography
GoldenPath hg19 (UCSC)CASP16  -     chr16:3194244-3199964 +  16p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CASP16  -     16p13.3   [Description]    (hg38-Dec_2013)
EnsemblCASP16 - 16p13.3 [CytoView hg19]  CASP16 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBICASP16 [Mapview hg19]  CASP16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF098666 AK096989 BC111724
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010393 NW_004929400
Consensus coding sequences : CCDS (NCBI)CASP16
Cluster EST : UnigeneHs.434132 [ NCBI ]
CGAP (NCI)Hs.434132
Gene ExpressionCASP16 [ NCBI-GEO ]   CASP16 [ EBI - ARRAY_EXPRESS ]   CASP16 [ SEEK ]   CASP16 [ MEM ]
Gene Expression Viewer (FireBrowse)CASP16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)197350
GTEX Portal (Tissue expression)CASP16
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CB46   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CB46  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CB46
Splice isoforms : SwissVarP0CB46
PhosPhoSitePlusP0CB46
Domaine pattern : Prosite (Expaxy)CASPASE_P10 (PS50207)    CASPASE_P20 (PS50208)   
Domains : Interpro (EBI)Caspase-like_dom    Pept_C14_caspase    Pept_C14_ICE_p20    Pept_C14_p10   
Domain families : Pfam (Sanger)Peptidase_C14 (PF00656)   
Domain families : Pfam (NCBI)pfam00656   
Conserved Domain (NCBI)CASP16
DMDM Disease mutations197350
Blocks (Seattle)CASP16
SuperfamilyP0CB46
Peptide AtlasP0CB46
IPIIPI00888838   
Protein Interaction databases
DIP (DOE-UCLA)P0CB46
IntAct (EBI)P0CB46
BioGRIDCASP16
STRING (EMBL)CASP16
ZODIACCASP16
Ontologies - Pathways
QuickGOP0CB46
Ontology : AmiGOcytoplasm  apoptotic process  activation of cysteine-type endopeptidase activity involved in apoptotic process  intrinsic apoptotic signaling pathway in response to DNA damage  extrinsic apoptotic signaling pathway in absence of ligand  cysteine-type endopeptidase activity involved in apoptotic signaling pathway  
Ontology : EGO-EBIcytoplasm  apoptotic process  activation of cysteine-type endopeptidase activity involved in apoptotic process  intrinsic apoptotic signaling pathway in response to DNA damage  extrinsic apoptotic signaling pathway in absence of ligand  cysteine-type endopeptidase activity involved in apoptotic signaling pathway  
NDEx NetworkCASP16
Atlas of Cancer Signalling NetworkCASP16
Wikipedia pathwaysCASP16
Orthology - Evolution
OrthoDB197350
Phylogenetic Trees/Animal Genes : TreeFamCASP16
HOVERGENP0CB46
HOGENOMP0CB46
Homologs : HomoloGeneCASP16
Homology/Alignments : Family Browser (UCSC)CASP16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCASP16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CASP16
dbVarCASP16
ClinVarCASP16
1000_GenomesCASP16 
Exome Variant ServerCASP16
ExAC (Exome Aggregation Consortium)CASP16 (select the gene name)
Genetic variants : HAPMAP197350
Genomic Variants (DGV)CASP16 [DGVbeta]
DECIPHER (Syndromes)16:3194244-3199964  
CONAN: Copy Number AnalysisCASP16 
Mutations
ICGC Data PortalCASP16 
TCGA Data PortalCASP16 
Broad Tumor PortalCASP16
OASIS PortalCASP16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCASP16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCASP16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CASP16
DgiDB (Drug Gene Interaction Database)CASP16
DoCM (Curated mutations)CASP16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CASP16 (select a term)
intoGenCASP16
Cancer3DCASP16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCASP16
Genetic Testing Registry CASP16
NextProtP0CB46 [Medical]
TSGene197350
GENETestsCASP16
Huge Navigator CASP16 [HugePedia]
snp3D : Map Gene to Disease197350
BioCentury BCIQCASP16
ClinGenCASP16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD197350
Clinical trialCASP16
Miscellaneous
canSAR (ICR)CASP16 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCASP16
EVEXCASP16
GoPubMedCASP16
iHOPCASP16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:58:10 CET 2017

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