Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CASP16P (caspase 16, pseudogene)

Identity

Alias_namesCASP16
caspase 16, apoptosis-related cysteine peptidase (putative)
Other alias
HGNC (Hugo) CASP16P
LocusID (NCBI) 197350
Atlas_Id 78160
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 3144291 and ends at 3149946 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CASP16P   27290
Cards
Entrez_Gene (NCBI)CASP16P  197350  caspase 16, pseudogene
AliasesCASP16
GeneCards (Weizmann)CASP16P
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:3144291-3149946 [Contig_View]  CASP16P [Vega]
TCGA cBioPortalCASP16P
AceView (NCBI)CASP16P
Genatlas (Paris)CASP16P
WikiGenes197350
SOURCE (Princeton)CASP16P
Genetics Home Reference (NIH)CASP16P
Genomic and cartography
GoldenPath hg38 (UCSC)CASP16P  -     chr16:3144291-3149946 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CASP16P  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblCASP16P - 16p13.3 [CytoView hg19]  CASP16P - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBICASP16P [Mapview hg19]  CASP16P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF098666 AK096989 BC111724
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CASP16P
Cluster EST : UnigeneHs.434132 [ NCBI ]
CGAP (NCI)Hs.434132
Gene ExpressionCASP16P [ NCBI-GEO ]   CASP16P [ EBI - ARRAY_EXPRESS ]   CASP16P [ SEEK ]   CASP16P [ MEM ]
Gene Expression Viewer (FireBrowse)CASP16P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)197350
GTEX Portal (Tissue expression)CASP16P
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CASP16P
DMDM Disease mutations197350
Blocks (Seattle)CASP16P
IPIIPI00888838   
Protein Interaction databases
BioGRIDCASP16P
STRING (EMBL)CASP16P
ZODIACCASP16P
Ontologies - Pathways
Huge Navigator CASP16P [HugePedia]
snp3D : Map Gene to Disease197350
BioCentury BCIQCASP16P
ClinGenCASP16P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD197350
Chemical/Pharm GKB GenePA166048979
Clinical trialCASP16P
Miscellaneous
canSAR (ICR)CASP16P (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCASP16P
EVEXCASP16P
GoPubMedCASP16P
iHOPCASP16P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:04:24 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.