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CASP4 (caspase 4)

Identity

Alias (NCBI)ICE(rel)II
ICEREL-II
ICH-2
Mih1
Mih1/TX
TX
HGNC (Hugo) CASP4
HGNC Alias symbICE(rel)II
ICH-2
TX
HGNC Previous namecaspase 4, apoptosis-related cysteine protease
 caspase 4, apoptosis-related cysteine peptidase
LocusID (NCBI) 837
Atlas_Id 921
Location 11q22.3  [Link to chromosome band 11q22]
Location_base_pair Starts at 104942866 and ends at 104968574 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CASP4 (11q22.3) / PIK3R4 (3q22.1)MEGF6 (1p36.32) / CASP4 (11q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)CASP4   1505
Cards
Entrez_Gene (NCBI)CASP4    caspase 4
AliasesICE(rel)II; ICEREL-II; ICH-2; Mih1; 
Mih1/TX; TX
GeneCards (Weizmann)CASP4
Ensembl hg19 (Hinxton)ENSG00000196954 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196954 [Gene_View]  ENSG00000196954 [Sequence]  chr11:104942866-104968574 [Contig_View]  CASP4 [Vega]
ICGC DataPortalENSG00000196954
TCGA cBioPortalCASP4
AceView (NCBI)CASP4
Genatlas (Paris)CASP4
SOURCE (Princeton)CASP4
Genetics Home Reference (NIH)CASP4
Genomic and cartography
GoldenPath hg38 (UCSC)CASP4  -     chr11:104942866-104968574 -  11q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CASP4  -     11q22.3   [Description]    (hg19-Feb_2009)
GoldenPathCASP4 - 11q22.3 [CytoView hg19]  CASP4 - 11q22.3 [CytoView hg38]
ImmunoBaseENSG00000196954
genome Data Viewer NCBICASP4 [Mapview hg19]  
OMIM602664   
Gene and transcription
Genbank (Entrez)AI128358 AK057094 AK225751 AK296081 AK304222
RefSeq transcript (Entrez)NM_001225 NM_033306 NM_033307
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CASP4
Alternative Splicing GalleryENSG00000196954
Gene ExpressionCASP4 [ NCBI-GEO ]   CASP4 [ EBI - ARRAY_EXPRESS ]   CASP4 [ SEEK ]   CASP4 [ MEM ]
Gene Expression Viewer (FireBrowse)CASP4 [ Firebrowse - Broad ]
GenevisibleExpression of CASP4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)837
GTEX Portal (Tissue expression)CASP4
Human Protein AtlasENSG00000196954-CASP4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CASP4
Blocks (Seattle)CASP4
Human Protein Atlas [tissue]ENSG00000196954-CASP4 [tissue]
HPRD04047
IPIIPI00027725   IPI00941180   IPI00910956   IPI00383774   IPI00376080   IPI00974338   IPI00983433   
Protein Interaction databases
BioGRIDCASP4
STRING (EMBL)CASP4
ZODIACCASP4
Ontologies - Pathways
Litterature
PubMed89 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCASP4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Mar 25 19:13:56 CET 2021

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