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CASP5 (caspase 5)

Identity

Alias (NCBI)ICE(rel)III
ICEREL-III
ICH-3
HGNC (Hugo) CASP5
HGNC Alias symbICE(rel)III
HGNC Previous namecaspase 5, apoptosis-related cysteine protease
 caspase 5, apoptosis-related cysteine peptidase
LocusID (NCBI) 838
Atlas_Id 922
Location 11q22.3  [Link to chromosome band 11q22]
Location_base_pair Starts at 104994243 and ends at 105023168 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)CASP5   1506
Cards
Entrez_Gene (NCBI)CASP5    caspase 5
AliasesICE(rel)III; ICEREL-III; ICH-3
GeneCards (Weizmann)CASP5
Ensembl hg19 (Hinxton)ENSG00000137757 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137757 [Gene_View]  ENSG00000137757 [Sequence]  chr11:104994243-105023168 [Contig_View]  CASP5 [Vega]
ICGC DataPortalENSG00000137757
TCGA cBioPortalCASP5
AceView (NCBI)CASP5
Genatlas (Paris)CASP5
SOURCE (Princeton)CASP5
Genetics Home Reference (NIH)CASP5
Genomic and cartography
GoldenPath hg38 (UCSC)CASP5  -     chr11:104994243-105023168 -  11q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CASP5  -     11q22.3   [Description]    (hg19-Feb_2009)
GoldenPathCASP5 - 11q22.3 [CytoView hg19]  CASP5 - 11q22.3 [CytoView hg38]
ImmunoBaseENSG00000137757
genome Data Viewer NCBICASP5 [Mapview hg19]  
OMIM602665   
Gene and transcription
Genbank (Entrez)AK296660 BC074994 BC113406 DQ228672 DQ228673
RefSeq transcript (Entrez)NM_001136109 NM_001136110 NM_001136112 NM_004347
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CASP5
Alternative Splicing GalleryENSG00000137757
Gene ExpressionCASP5 [ NCBI-GEO ]   CASP5 [ EBI - ARRAY_EXPRESS ]   CASP5 [ SEEK ]   CASP5 [ MEM ]
Gene Expression Viewer (FireBrowse)CASP5 [ Firebrowse - Broad ]
GenevisibleExpression of CASP5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)838
GTEX Portal (Tissue expression)CASP5
Human Protein AtlasENSG00000137757-CASP5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CASP5
Blocks (Seattle)CASP5
Human Protein Atlas [tissue]ENSG00000137757-CASP5 [tissue]
HPRD04048
IPIIPI00942522   IPI00914557   IPI00914544   IPI00020978   IPI00979949   IPI00784640   IPI00784770   IPI00872124   IPI00873979   
Protein Interaction databases
BioGRIDCASP5
STRING (EMBL)CASP5
ZODIACCASP5
Ontologies - Pathways
Litterature
PubMed58 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCASP5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 25 19:13:56 CET 2021

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