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CASP6 (caspase 6)

Identity

Other namesMCH2
HGNC (Hugo) CASP6
LocusID (NCBI) 839
Atlas_Id 923
Location 4q25
Location_base_pair Starts at 110609785 and ends at 110624629 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CASP6   1507
Cards
Entrez_Gene (NCBI)CASP6  839  caspase 6
GeneCards (Weizmann)CASP6
Ensembl hg19 (Hinxton)ENSG00000138794 [Gene_View]  chr4:110609785-110624629 [Contig_View]  CASP6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000138794 [Gene_View]  chr4:110609785-110624629 [Contig_View]  CASP6 [Vega]
ICGC DataPortalENSG00000138794
TCGA cBioPortalCASP6
AceView (NCBI)CASP6
Genatlas (Paris)CASP6
WikiGenes839
SOURCE (Princeton)CASP6
Genomic and cartography
GoldenPath hg19 (UCSC)CASP6  -     chr4:110609785-110624629 -  4q25   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CASP6  -     4q25   [Description]    (hg38-Dec_2013)
EnsemblCASP6 - 4q25 [CytoView hg19]  CASP6 - 4q25 [CytoView hg38]
Mapping of homologs : NCBICASP6 [Mapview hg19]  CASP6 [Mapview hg38]
OMIM601532   
Gene and transcription
Genbank (Entrez)BC000305 BC004460 BM837197 BX380795 DQ894589
RefSeq transcript (Entrez)NM_001226 NM_032992
RefSeq genomic (Entrez)NC_000004 NC_018915 NG_029187 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)CASP6
Cluster EST : UnigeneHs.654616 [ NCBI ]
CGAP (NCI)Hs.654616
Alternative Splicing : Fast-db (Paris)GSHG0023468
Alternative Splicing GalleryENSG00000138794
Gene ExpressionCASP6 [ NCBI-GEO ]     CASP6 [ SEEK ]   CASP6 [ MEM ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)839
Protein : pattern, domain, 3D structure
UniProt/SwissProtP55212 (Uniprot)
NextProtP55212  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP55212
Splice isoforms : SwissVarP55212 (Swissvar)
Catalytic activity : Enzyme3.4.22.59 [ Enzyme-Expasy ]   3.4.22.59 [ Enzyme-SRS ]   3.4.22.59 [ IntEnz-EBI ]   3.4.22.59 [ PRIAM ]   3.4.22.59 [ BRENDA ]   3.4.22.59 [ KEGG ]   3.4.22.59 [ IUBMB ]
PhosPhoSitePlusP55212
Domaine pattern : Prosite (Expaxy)CASPASE_CYS (PS01122)    CASPASE_HIS (PS01121)    CASPASE_P10 (PS50207)    CASPASE_P20 (PS50208)   
Domains : Interpro (EBI)Caspase-like_dom    Pept_C14_caspase    Pept_C14_ICE_p20    Pept_C14_ICE_p20_AS    Pept_C14_p10    Pept_C14A_p45_core   
Domain families : Pfam (Sanger)Peptidase_C14 (PF00656)   
Domain families : Pfam (NCBI)pfam00656   
Domain families : Smart (EMBL)CASc (SM00115)  
DMDM Disease mutations839
Blocks (Seattle)CASP6
PDB (SRS)1MI9    2WDP    3K7E    3NKF    3NR2    3OD5    3P45    3P4U    3QNW    3S70    3S8E    3V6L    3V6M    4EJF    4FXO    4HVA    4IYR    4N5D    4N6G    4N7J    4N7M    4NBK    4NBL    4NBN   
PDB (PDBSum)1MI9    2WDP    3K7E    3NKF    3NR2    3OD5    3P45    3P4U    3QNW    3S70    3S8E    3V6L    3V6M    4EJF    4FXO    4HVA    4IYR    4N5D    4N6G    4N7J    4N7M    4NBK    4NBL    4NBN   
PDB (IMB)1MI9    2WDP    3K7E    3NKF    3NR2    3OD5    3P45    3P4U    3QNW    3S70    3S8E    3V6L    3V6M    4EJF    4FXO    4HVA    4IYR    4N5D    4N6G    4N7J    4N7M    4NBK    4NBL    4NBN   
PDB (RSDB)1MI9    2WDP    3K7E    3NKF    3NR2    3OD5    3P45    3P4U    3QNW    3S70    3S8E    3V6L    3V6M    4EJF    4FXO    4HVA    4IYR    4N5D    4N6G    4N7J    4N7M    4NBK    4NBL    4NBN   
Structural Biology KnowledgeBase1MI9    2WDP    3K7E    3NKF    3NR2    3OD5    3P45    3P4U    3QNW    3S70    3S8E    3V6L    3V6M    4EJF    4FXO    4HVA    4IYR    4N5D    4N6G    4N7J    4N7M    4NBK    4NBL    4NBN   
SCOP (Structural Classification of Proteins)1MI9    2WDP    3K7E    3NKF    3NR2    3OD5    3P45    3P4U    3QNW    3S70    3S8E    3V6L    3V6M    4EJF    4FXO    4HVA    4IYR    4N5D    4N6G    4N7J    4N7M    4NBK    4NBL    4NBN   
CATH (Classification of proteins structures)1MI9    2WDP    3K7E    3NKF    3NR2    3OD5    3P45    3P4U    3QNW    3S70    3S8E    3V6L    3V6M    4EJF    4FXO    4HVA    4IYR    4N5D    4N6G    4N7J    4N7M    4NBK    4NBL    4NBN   
Human Protein AtlasENSG00000138794
Peptide AtlasP55212
HPRD03321
IPIIPI00023876   IPI00217208   IPI00966630   IPI00966602   
Protein Interaction databases
DIP (DOE-UCLA)P55212
IntAct (EBI)P55212
FunCoupENSG00000138794
BioGRIDCASP6
IntegromeDBCASP6
STRING (EMBL)CASP6
ZODIACCASP6
Ontologies - Pathways
QuickGOP55212
Ontology : AmiGOcysteine-type endopeptidase activity  protein binding  nucleoplasm  nucleoplasm  cytoplasm  cytosol  cytosol  proteolysis  apoptotic process  cellular component disassembly involved in execution phase of apoptosis  cysteine-type peptidase activity  programmed cell death  epithelial cell differentiation  identical protein binding  cysteine-type endopeptidase activity involved in apoptotic process  
Ontology : EGO-EBIcysteine-type endopeptidase activity  protein binding  nucleoplasm  nucleoplasm  cytoplasm  cytosol  cytosol  proteolysis  apoptotic process  cellular component disassembly involved in execution phase of apoptosis  cysteine-type peptidase activity  programmed cell death  epithelial cell differentiation  identical protein binding  cysteine-type endopeptidase activity involved in apoptotic process  
Pathways : BIOCARTAInduction of apoptosis through DR3 and DR4/5 Death Receptors [Genes]    Role of Mitochondria in Apoptotic Signaling [Genes]    Caspase Cascade in Apoptosis [Genes]    HIV-I Nef: negative effector of Fas and TNF [Genes]    Apoptotic Signaling in Response to DNA Damage [Genes]    FAS signaling pathway ( CD95 ) [Genes]   
Pathways : KEGGApoptosis   
Protein Interaction DatabaseCASP6
Atlas of Cancer Signalling NetworkCASP6
Wikipedia pathwaysCASP6
Orthology - Evolution
OrthoDB839
GeneTree (enSembl)ENSG00000138794
Phylogenetic Trees/Animal Genes : TreeFamCASP6
Homologs : HomoloGeneCASP6
Homology/Alignments : Family Browser (UCSC)CASP6
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerCASP6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CASP6
dbVarCASP6
ClinVarCASP6
1000_GenomesCASP6 
Exome Variant ServerCASP6
Exome Aggregation Consortium (ExAC)ENSG00000138794
SNP (GeneSNP Utah)CASP6
SNP : HGBaseCASP6
Genetic variants : HAPMAPCASP6
Genomic Variants (DGV)CASP6 [DGVbeta]
Mutations
ICGC Data PortalCASP6 
TCGA Data PortalCASP6 
Tumor PortalCASP6
TCGA Copy Number PortalCASP6
Somatic Mutations in Cancer : COSMICCASP6 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CASP6
DgiDB (Drug Gene Interaction Database)CASP6
DoCM (Curated mutations)CASP6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CASP6 (select a term)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)4:110609785-110624629
CONAN: Copy Number AnalysisCASP6 
Mutations and Diseases : HGMDCASP6
OMIM601532   
MedgenCASP6
NextProtP55212 [Medical]
TSGene839
GENETestsCASP6
Huge Navigator CASP6 [HugePedia]  CASP6 [HugeCancerGEM]
snp3D : Map Gene to Disease839
BioCentury BCIQCASP6
General knowledge
Chemical/Protein Interactions : CTD839
Chemical/Pharm GKB GenePA26090
Clinical trialCASP6
Other databases
Probes
Litterature
PubMed126 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCASP6
GoPubMedCASP6
iHOPCASP6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Jan 16 18:16:19 CET 2016

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